Variant report

Variant	rs56217917
Chromosome Location	chr6:54980576-54980577
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr13:74703120..74703896-chr6:54980071..54980846,2	MCF-7	breast:

Extended variants
information (count: 29 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs10948881	0.80[ASN][1000 genomes]
rs11966562	0.82[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs12199525	0.91[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs12209948	0.83[AFR][1000 genomes];0.90[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs12213653	0.83[AMR][1000 genomes]
rs4236121	0.83[AFR][1000 genomes];0.96[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs4236122	0.83[AFR][1000 genomes];0.96[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs4289638	0.82[AFR][1000 genomes];0.90[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs4438959	0.82[AMR][1000 genomes]
rs4518493	0.83[AMR][1000 genomes]
rs4563716	0.83[ASN][1000 genomes]
rs4571554	0.81[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4712090	0.83[AFR][1000 genomes];0.96[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs4712092	0.81[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4712094	0.81[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4715504	0.83[ASN][1000 genomes]
rs4715516	0.82[AFR][1000 genomes];0.95[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs62416378	0.82[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs62416416	0.83[AFR][1000 genomes];0.96[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs6918018	0.83[ASN][1000 genomes]
rs72975482	0.95[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs72978512	0.83[AFR][1000 genomes];0.96[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs7746448	0.86[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7753352	0.83[ASN][1000 genomes]
rs7760318	0.83[ASN][1000 genomes]
rs9367608	0.83[ASN][1000 genomes]
rs9382434	0.81[EUR][1000 genomes]
rs9382442	0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1033543	chr6:54978528-55000338	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:54980400-54981600	Weak transcription	Duodenum Mucosa	Duodenum

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