Variant report

Variant	rs56218511
Chromosome Location	chr5:92694996-92694997
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:92671979..92673902-chr5:92694437..92696001,2	MCF-7	breast:

Extended variants
information (count: 4 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs12188716	0.82[AMR][1000 genomes]
rs17368567	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];0.89[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830400	chr5:92515026-92738896	Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
2	nsv830401	chr5:92518294-92703611	Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Active TSS Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:92692200-92696800	Enhancers	HMEC	breast
2	chr5:92692400-92695000	Weak transcription	HSMM	muscle
3	chr5:92693600-92695200	Enhancers	Hela-S3	cervix
4	chr5:92693600-92695400	Enhancers	Osteobl	bone
5	chr5:92693600-92696000	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
6	chr5:92693600-92696200	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
7	chr5:92693800-92695800	Enhancers	Fetal Lung	lung
8	chr5:92694000-92695000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
9	chr5:92694000-92695000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
10	chr5:92694000-92695000	Weak transcription	NHEK	skin
11	chr5:92694000-92695600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
12	chr5:92694600-92695200	Flanking Active TSS	HUVEC	blood vessel
13	chr5:92694600-92695400	Enhancers	Fetal Kidney	kidney
14	chr5:92694600-92695800	Enhancers	Adipose Nuclei	Adipose
15	chr5:92694600-92695800	Enhancers	NHDF-Ad	bronchial
16	chr5:92694600-92695800	Enhancers	NHLF	lung
17	chr5:92694600-92696000	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
18	chr5:92694800-92695000	Enhancers	NH-A	brain
19	chr5:92694800-92695200	Enhancers	Muscle Satellite Cultured Cells	--
20	chr5:92694800-92695600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
21	chr5:92694800-92695800	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
22	chr5:92694800-92695800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell

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