Variant report

Variant	rs56223303
Chromosome Location	chr3:23211615-23211616
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs10154847	0.80[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10510536	0.81[ASN][1000 genomes]
rs11916059	0.80[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11926494	0.89[EUR][1000 genomes]
rs11927173	0.93[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs13314285	0.81[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1495130	0.83[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs17012800	0.83[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs17012829	0.90[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1908475	0.89[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs4078178	0.83[ASN][1000 genomes]
rs58724157	0.93[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs60782093	0.83[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs61578857	0.83[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6765801	0.93[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs6780569	0.84[ASN][1000 genomes]
rs9812056	0.89[ASN][1000 genomes]
rs9831921	0.84[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9847818	0.84[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv999882	chr3:23121533-23257718	Enhancers Flanking Active TSS Weak transcription Active TSS Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	nsv834636	chr3:23138653-23301443	Enhancers Flanking Active TSS Active TSS Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:23211400-23213200	Weak transcription	A549	lung
2	chr3:23211400-23213400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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