The 2.0 version of rSNPBase

Variant report

Variant rs562237592
Chromosome Location chr1:172685908-172685909
allele C/T
Outlinks Ensembl   UCSC
Chromatin state (count:39 , 50 per page) page: 1
No. Chromosome Location Chromatin state Cell line Tissue
1 chr1:172683400-172689200 Weak transcription H1 Cell Line embryonic stem cell
2 chr1:172684000-172688000 Weak transcription ES-I3 Cell Line embryonic stem cell
3 chr1:172684000-172688400 Weak transcription HUES48 Cell Line embryonic stem cell
4 chr1:172684000-172689000 Weak transcription iPS-15b Cell Line embryonic stem cell
5 chr1:172684000-172692400 Weak transcription HUES64 Cell Line embryonic stem cell
6 chr1:172684600-172686200 Enhancers NHEK skin
7 chr1:172685000-172686000 Enhancers H9 Derived Neuronal Progenitor Cultured Cells ES cell derived
8 chr1:172685000-172686000 Enhancers H9 Derived Neuron Cultured Cells ES cell derived
9 chr1:172685000-172686000 Enhancers Foreskin Keratinocyte Primary Cells skin02 Skin
10 chr1:172685000-172686000 Enhancers HMEC breast
11 chr1:172685000-172686200 Enhancers H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
12 chr1:172685000-172686800 Enhancers Fetal Heart heart
13 chr1:172685000-172690400 Enhancers Placenta Placenta
14 chr1:172685400-172686000 Enhancers Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
15 chr1:172685400-172686000 Enhancers Primary T cells from cord blood blood
16 chr1:172685400-172686200 Enhancers Fetal Thymus thymus
17 chr1:172685400-172686800 Enhancers Primary T helper memory cells from peripheral blood 1 blood
18 chr1:172685400-172687200 Enhancers Foreskin Melanocyte Primary Cells skin03 Skin
19 chr1:172685400-172687400 Enhancers Primary T helper cells PMA-I stimulated --
20 chr1:172685400-172687400 Enhancers HepG2 liver
21 chr1:172685400-172687600 Enhancers Primary T helper 17 cells PMA-I stimulated --
22 chr1:172685400-172689200 Enhancers Primary Natural Killer cells fromperipheralblood blood
23 chr1:172685600-172686000 Enhancers Primary T helper cells fromperipheralblood blood
24 chr1:172685600-172686000 Enhancers Primary T killer memory cells from peripheral blood blood
25 chr1:172685600-172686200 Enhancers Primary T cells fromperipheralblood blood
26 chr1:172685600-172686200 Enhancers Primary T helper memory cells from peripheral blood 2 blood
27 chr1:172685600-172686200 Enhancers Primary T helper naive cells from peripheral blood blood
28 chr1:172685600-172686200 Enhancers Thymus Thymus
29 chr1:172685600-172686200 Enhancers Dnd41 blood
30 chr1:172685600-172687000 Weak transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
31 chr1:172685600-172687000 Weak transcription Placenta Amnion Placenta Amnion
32 chr1:172685800-172686000 Enhancers IMR90 fetal lung fibroblasts Cell Line lung
33 chr1:172685800-172686000 Enhancers Primary T regulatory cells fromperipheralblood blood
34 chr1:172685800-172686000 Enhancers Primary T cells effector/memory enriched fromperipheralblood blood
35 chr1:172685800-172686200 Enhancers Primary T helper naive cells fromperipheralblood blood
36 chr1:172685800-172686200 Enhancers Osteobl bone
37 chr1:172685800-172686800 Weak transcription Foreskin Keratinocyte Primary Cells skin03 Skin
38 chr1:172685800-172689000 Weak transcription Primary T killer naive cells fromperipheralblood blood
39 chr1:172685800-172689000 Weak transcription Left Ventricle heart

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Last update: Aug 31, 2015