Variant report

Variant	rs56225650
Chromosome Location	chr13:51254019-51254020
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs55735210	1.00[AMR][1000 genomes]
rs56143723	1.00[AMR][1000 genomes]
rs58358220	1.00[AMR][1000 genomes]
rs59155575	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2753964	chr13:50545399-51421199	Flanking Active TSS Enhancers Bivalent Enhancer Weak transcription Active TSS Genic enhancers Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	1256 gene(s)	inside rSNPs	diseases
2	esv2753492	chr13:50550081-51461720	Enhancers Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Weak transcription Strong transcription Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	1256 gene(s)	inside rSNPs	diseases
3	esv2753864	chr13:51136699-51375199	Weak transcription Enhancers Flanking Active TSS Genic enhancers Bivalent Enhancer Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:39 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:51244800-51258200	Weak transcription	Skeletal Muscle Male	skeletal muscle
2	chr13:51247400-51260200	Weak transcription	HepG2	liver
3	chr13:51250000-51255200	Enhancers	Osteobl	bone
4	chr13:51250000-51256200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
5	chr13:51250200-51254400	Enhancers	HSMMtube	muscle
6	chr13:51250400-51254400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
7	chr13:51250400-51258400	Weak transcription	Psoas Muscle	Psoas
8	chr13:51250600-51254200	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
9	chr13:51250600-51254800	Enhancers	Fetal Heart	heart
10	chr13:51251400-51261000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
11	chr13:51251400-51265600	Weak transcription	Duodenum Smooth Muscle	Duodenum
12	chr13:51252400-51254400	Enhancers	HUVEC	blood vessel
13	chr13:51252800-51254400	Enhancers	Brain Cingulate Gyrus	brain
14	chr13:51252800-51256800	Weak transcription	Dnd41	blood
15	chr13:51252800-51257800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
16	chr13:51253000-51256400	Weak transcription	Brain Angular Gyrus	brain
17	chr13:51253000-51257000	Weak transcription	Cortex derived primary cultured neurospheres	brain
18	chr13:51253000-51258400	Weak transcription	Brain Germinal Matrix	brain
19	chr13:51253000-51258400	Weak transcription	Fetal Muscle Trunk	muscle
20	chr13:51253200-51255000	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
21	chr13:51253200-51256600	Enhancers	Brain Hippocampus Middle	brain
22	chr13:51253400-51254400	Enhancers	HSMM	muscle
23	chr13:51253400-51255000	Enhancers	Brain Anterior Caudate	brain
24	chr13:51253400-51255200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
25	chr13:51253400-51256200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
26	chr13:51253400-51256200	Weak transcription	Thymus	Thymus
27	chr13:51253400-51256400	Weak transcription	Brain Inferior Temporal Lobe	brain
28	chr13:51253400-51256600	Weak transcription	Fetal Muscle Leg	muscle
29	chr13:51253400-51257800	Weak transcription	Left Ventricle	heart
30	chr13:51253400-51258200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
31	chr13:51253400-51258200	Weak transcription	Skeletal Muscle Female	skeletal muscle
32	chr13:51253400-51258400	Weak transcription	Right Atrium	heart
33	chr13:51253400-51259200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
34	chr13:51253400-51265000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
35	chr13:51253600-51254400	Enhancers	Muscle Satellite Cultured Cells	--
36	chr13:51253600-51254400	Enhancers	NH-A	brain
37	chr13:51253600-51256200	Weak transcription	Fetal Thymus	thymus
38	chr13:51253800-51254800	Weak transcription	Brain Substantia Nigra	brain
39	chr13:51254000-51259000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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