The 2.0 version of rSNPBase

Variant report

Variant rs56226847
Chromosome Location chr11:16824389-16824390
allele A/G
Outlinks Ensembl   UCSC
Chromatin state (count:73 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr11:16777200-16826000 Weak transcription Brain Substantia Nigra brain
2 chr11:16795800-16831400 Weak transcription Brain Germinal Matrix brain
3 chr11:16797200-16837800 Weak transcription iPS DF 6.9 Cell Line embryonic stem cell
4 chr11:16799000-16842200 Weak transcription iPS-15b Cell Line embryonic stem cell
5 chr11:16801400-16833400 Weak transcription iPS-18 Cell Line embryonic stem cell
6 chr11:16802200-16827600 Weak transcription Brain Cingulate Gyrus brain
7 chr11:16803400-16826000 Weak transcription Pancreatic Islets Pancreatic Islet
8 chr11:16803800-16842000 Weak transcription Fetal Kidney kidney
9 chr11:16807400-16828000 Weak transcription Brain Inferior Temporal Lobe brain
10 chr11:16807800-16826000 Weak transcription Duodenum Smooth Muscle Duodenum
11 chr11:16810000-16833600 Weak transcription iPS-20b Cell Line embryonic stem cell
12 chr11:16810400-16834200 Weak transcription HUES6 Cell Line embryonic stem cell
13 chr11:16813200-16825000 Strong transcription Fetal Intestine Large intestine
14 chr11:16813200-16828000 Weak transcription Fetal Brain Female brain
15 chr11:16813200-16871400 Weak transcription Rectal Smooth Muscle rectum
16 chr11:16813400-16825200 Weak transcription Primary T helper memory cells from peripheral blood 2 blood
17 chr11:16813600-16825600 Weak transcription Lung lung
18 chr11:16813600-16826200 Weak transcription Brain Hippocampus Middle brain
19 chr11:16813600-16828200 Weak transcription Brain Dorsolateral Prefrontal Cortex brain
20 chr11:16813800-16825600 Weak transcription Small Intestine intestine
21 chr11:16814800-16831600 Weak transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
22 chr11:16815400-16824800 Strong transcription Liver Liver
23 chr11:16815400-16826000 Weak transcription A549 lung
24 chr11:16815400-16827600 Weak transcription Aorta Aorta
25 chr11:16815400-16828000 Weak transcription HSMMtube muscle
26 chr11:16815800-16832600 Weak transcription ES-UCSF4 Cell Line embryonic stem cell
27 chr11:16816800-16836400 Weak transcription Thymus Thymus
28 chr11:16818800-16825800 Enhancers Primary T helper 17 cells PMA-I stimulated --
29 chr11:16820000-16825400 Weak transcription Spleen Spleen
30 chr11:16820000-16832600 Weak transcription hESC Derived CD56+ Ectoderm Cultured Cells ES cell derived
31 chr11:16821000-16825800 Strong transcription Fetal Intestine Small intestine
32 chr11:16821200-16824800 Strong transcription H9 Derived Neuron Cultured Cells ES cell derived
33 chr11:16821200-16824800 Strong transcription Placenta Placenta
34 chr11:16821200-16826600 Weak transcription Primary monocytes fromperipheralblood blood
35 chr11:16821400-16824400 Strong transcription Esophagus oesophagus
36 chr11:16821800-16825000 Strong transcription Fetal Adrenal Gland Adrenal Gland
37 chr11:16822000-16825000 Strong transcription Breast Myoepithelial Primary Cells Breast
38 chr11:16822000-16825000 Strong transcription Stomach Smooth Muscle stomach
39 chr11:16822000-16826600 Weak transcription Primary T helper memory cells from peripheral blood 1 blood
40 chr11:16822200-16825000 Strong transcription Rectal Mucosa Donor 29 rectum
41 chr11:16822400-16825400 Strong transcription Sigmoid Colon Sigmoid Colon
42 chr11:16822400-16825600 Weak transcription Primary hematopoietic stem cells short term culture blood
43 chr11:16822400-16825600 Weak transcription Stomach Mucosa stomach
44 chr11:16822400-16825800 Weak transcription HUVEC blood vessel
45 chr11:16822600-16827800 Weak transcription Primary hematopoietic stem cells G-CSF-mobilized Male --
46 chr11:16822800-16825600 Weak transcription Colonic Mucosa Colon
47 chr11:16822800-16827600 Weak transcription hESC Derived CD184+ Endoderm Cultured Cells ES cell derived
48 chr11:16822800-16828000 Weak transcription Primary hematopoietic stem cells G-CSF-mobilized Female --
49 chr11:16822800-16840200 Strong transcription H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
50 chr11:16822800-16840200 Weak transcription hESC Derived CD56+ Mesoderm Cultured Cells ES cell derived

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Last update: Aug 31, 2015