Variant report

Variant	rs56233972
Chromosome Location	chr15:76517877-76517878
allele	A/G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:76517181..76519721-chr15:76602211..76604425,2	K562	blood:
2	chr15:76515156..76518708-chr15:76522074..76525565,3	K562	blood:

Variant related genes	Relation type
ENSG00000140374	Chromatin interaction

Extended variants
information (count: 45 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:43)

rs_ID	r²[population]
rs11854972	0.90[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11856244	0.86[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs11856470	0.90[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11857880	0.90[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2469208	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55831300	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55923544	0.90[EUR][1000 genomes]
rs56220133	1.00[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56313024	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59691037	0.90[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60261704	0.90[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62027004	0.90[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62027007	0.90[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62027010	0.90[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62027014	0.90[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62027016	0.90[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62027019	0.86[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62027054	0.90[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62027059	0.86[AMR][1000 genomes]
rs62028361	0.86[AMR][1000 genomes]
rs62030162	0.86[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs62030163	0.86[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs62030169	0.86[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs62030170	0.86[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs62030172	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62030183	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62030184	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62030186	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62030187	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62030191	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62030230	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62030234	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62030240	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6495195	0.95[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7167004	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs7175022	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7177769	0.86[AFR][1000 genomes]
rs72736846	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72736862	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72736888	0.90[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72736892	0.90[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73448114	0.86[AMR][1000 genomes]
rs8042654	0.90[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv569998	chr15:76232605-76550938	Enhancers Flanking Active TSS Weak transcription Strong transcription ZNF genes & repeats Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases
2	nsv833057	chr15:76367848-76585868	ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Weak transcription Enhancers Genic enhancers Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:122 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:76489400-76519800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
2	chr15:76492800-76526400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
3	chr15:76493600-76526400	Weak transcription	H1 Cell Line	embryonic stem cell
4	chr15:76497000-76518200	Strong transcription	Duodenum Mucosa	Duodenum
5	chr15:76499200-76527400	Weak transcription	Fetal Brain Male	brain
6	chr15:76500600-76534800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
7	chr15:76501200-76524200	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
8	chr15:76503600-76551400	Weak transcription	Small Intestine	intestine
9	chr15:76505800-76518000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
10	chr15:76506000-76526800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
11	chr15:76506200-76526800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
12	chr15:76506400-76525600	Weak transcription	Fetal Brain Female	brain
13	chr15:76507200-76551400	Weak transcription	Brain Hippocampus Middle	brain
14	chr15:76508000-76525000	Weak transcription	NHLF	lung
15	chr15:76508000-76525400	Weak transcription	H9 Cell Line	embryonic stem cell
16	chr15:76508200-76521400	Weak transcription	NHDF-Ad	bronchial
17	chr15:76508400-76546000	Weak transcription	Brain Anterior Caudate	brain
18	chr15:76508600-76525200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
19	chr15:76510000-76523000	Weak transcription	Brain Inferior Temporal Lobe	brain
20	chr15:76510000-76534600	Weak transcription	Brain Substantia Nigra	brain
21	chr15:76510200-76526000	Weak transcription	Brain Cingulate Gyrus	brain
22	chr15:76510200-76555400	Weak transcription	Psoas Muscle	Psoas
23	chr15:76510400-76523600	Weak transcription	HMEC	breast
24	chr15:76510400-76538000	Weak transcription	HUVEC	blood vessel
25	chr15:76510400-76538200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
26	chr15:76510400-76555000	Weak transcription	NH-A	brain
27	chr15:76511200-76518200	Strong transcription	A549	lung
28	chr15:76511600-76518200	Strong transcription	Primary hematopoietic stem cells	blood
29	chr15:76511800-76525400	Strong transcription	Liver	Liver
30	chr15:76512000-76525400	Strong transcription	Primary hematopoietic stem cells short term culture	blood
31	chr15:76512000-76525600	Strong transcription	Monocytes-CD14+_RO01746	blood
32	chr15:76512200-76518200	Strong transcription	Adipose Nuclei	Adipose
33	chr15:76512600-76518600	Strong transcription	Primary B cells from peripheral blood	blood
34	chr15:76513200-76518800	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
35	chr15:76513200-76559400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
36	chr15:76513400-76524800	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
37	chr15:76513600-76522400	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
38	chr15:76513600-76523800	Strong transcription	Primary T helper cells fromperipheralblood	blood
39	chr15:76513800-76518200	Strong transcription	Rectal Mucosa Donor 29	rectum
40	chr15:76513800-76518600	Strong transcription	Hela-S3	cervix
41	chr15:76513800-76551400	Weak transcription	Stomach Mucosa	stomach
42	chr15:76514000-76518200	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
43	chr15:76514200-76525000	Weak transcription	Pancreatic Islets	Pancreatic Islet
44	chr15:76514600-76518200	Strong transcription	Dnd41	blood
45	chr15:76514800-76518000	Strong transcription	Fetal Muscle Trunk	muscle
46	chr15:76514800-76518200	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
47	chr15:76514800-76518200	Strong transcription	Primary T cells from cord blood	blood
48	chr15:76514800-76520000	Strong transcription	Fetal Intestine Small	intestine
49	chr15:76514800-76525000	Strong transcription	Primary monocytes fromperipheralblood	blood
50	chr15:76515000-76518000	Strong transcription	Fetal Stomach	stomach

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