Variant report

Variant	rs56237431
Chromosome Location	chr1:225029874-225029875
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 58 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:58)

rs_ID	r²[population]
rs10495228	0.83[ASN][1000 genomes]
rs12097622	0.87[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs12564683	0.82[ASN][1000 genomes]
rs12565019	0.83[ASN][1000 genomes]
rs12567461	0.83[ASN][1000 genomes]
rs12567470	0.83[ASN][1000 genomes]
rs1316512	0.83[AFR][1000 genomes];0.84[AMR][1000 genomes];0.88[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1361923	0.83[AFR][1000 genomes];0.84[AMR][1000 genomes];0.88[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1436166	0.82[EUR][1000 genomes]
rs1600865	0.82[ASN][1000 genomes]
rs16856396	0.96[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16856435	0.96[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16856463	0.96[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16856829	0.96[AFR][1000 genomes];0.87[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs16857787	0.83[AFR][1000 genomes];0.83[ASN][1000 genomes]
rs16858145	0.83[ASN][1000 genomes]
rs16858216	0.83[ASN][1000 genomes]
rs16858299	0.82[ASN][1000 genomes]
rs1806563	0.88[AFR][1000 genomes];0.83[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs1892121	0.83[AFR][1000 genomes];0.84[AMR][1000 genomes];0.88[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1936629	0.82[ASN][1000 genomes]
rs1936632	0.83[AFR][1000 genomes];0.84[AMR][1000 genomes];0.88[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2016652	0.82[EUR][1000 genomes]
rs2101143	0.83[ASN][1000 genomes]
rs2252950	0.83[AFR][1000 genomes];0.84[AMR][1000 genomes];0.84[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2298257	0.96[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2406098	0.81[ASN][1000 genomes]
rs2449316	0.81[ASN][1000 genomes]
rs2489302	0.80[ASN][1000 genomes]
rs2489310	0.82[ASN][1000 genomes]
rs2501081	0.83[ASN][1000 genomes]
rs2574874	0.82[EUR][1000 genomes]
rs2574876	0.81[EUR][1000 genomes]
rs2662924	0.82[EUR][1000 genomes]
rs2662925	0.81[EUR][1000 genomes]
rs2662927	0.82[EUR][1000 genomes]
rs2662929	0.83[AFR][1000 genomes];0.84[AMR][1000 genomes];0.88[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2800234	0.99[ASN][1000 genomes]
rs2802552	0.82[EUR][1000 genomes]
rs2802556	0.82[EUR][1000 genomes]
rs2802558	0.82[EUR][1000 genomes]
rs2802559	0.82[EUR][1000 genomes]
rs2802563	0.82[EUR][1000 genomes]
rs2802568	0.93[EUR][1000 genomes]
rs2802732	0.93[EUR][1000 genomes]
rs2802733	0.91[EUR][1000 genomes]
rs2802744	0.84[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs2997478	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs2997501	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs4379650	0.81[ASN][1000 genomes]
rs4587536	0.96[AFR][1000 genomes];0.82[AMR][1000 genomes];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs55635719	0.92[ASN][1000 genomes]
rs55752315	0.96[AFR][1000 genomes];0.82[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs55754430	0.83[ASN][1000 genomes]
rs56203783	0.87[AFR][1000 genomes];0.82[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs61466304	0.83[ASN][1000 genomes]
rs61540517	0.91[AFR][1000 genomes];0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs729398	0.83[ASN][1000 genomes]

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:225028600-225039200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
2	chr1:225028800-225031000	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
3	chr1:225029800-225030200	ZNF genes & repeats	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived

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