Variant report

Variant	rs562392608
Chromosome Location	chr11:46026747-46026748
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:45961429..45964338-chr11:46026133..46027935,2	MCF-7	breast:
2	chr11:46019054..46021565-chr11:46025255..46027912,2	K562	blood:
3	chr11:46021583..46025208-chr11:46025456..46028440,3	K562	blood:
4	chr11:46024538..46028805-chr11:46032055..46036011,4	K562	blood:
5	chr11:45927204..45929356-chr11:46025400..46027265,2	K562	blood:

Variant related genes	Relation type
ENSG00000234776	Chromatin interaction
ENSG00000255498	Chromatin interaction

Extended variants
information (count: 3 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv523952	chr11:45983385-46028281	Enhancers Weak transcription Active TSS Strong transcription Genic enhancers Flanking Active TSS	TF binding region CpG island Chromatin interactive region	8 gene(s)	inside rSNPs	diseases
2	nsv522527	chr11:46024183-46033104	Enhancers Weak transcription Strong transcription Flanking Active TSS	Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
3	nsv972948	chr11:46025325-46031491	Weak transcription Enhancers Flanking Active TSS Strong transcription	Chromatin interactive region	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:50 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:46001400-46070400	Weak transcription	Primary hematopoietic stem cells	blood
2	chr11:46002000-46042400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
3	chr11:46002000-46056200	Weak transcription	Primary T helper cells fromperipheralblood	blood
4	chr11:46012800-46031000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
5	chr11:46012800-46062800	Weak transcription	GM12878-XiMat	blood
6	chr11:46016200-46048200	Weak transcription	Esophagus	oesophagus
7	chr11:46016800-46044000	Weak transcription	Primary T cells from cord blood	blood
8	chr11:46017000-46032000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
9	chr11:46020600-46026800	Enhancers	Fetal Brain Male	brain
10	chr11:46022000-46033600	Weak transcription	Primary B cells from cord blood	blood
11	chr11:46022000-46074600	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
12	chr11:46022600-46028200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
13	chr11:46023000-46028000	Enhancers	iPS-15b Cell Line	embryonic stem cell
14	chr11:46023000-46029000	Enhancers	HUES48 Cell Line	embryonic stem cell
15	chr11:46023400-46027600	Weak transcription	Skeletal Muscle Female	skeletal muscle
16	chr11:46023400-46038200	Weak transcription	A549	lung
17	chr11:46023400-46041800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
18	chr11:46023400-46047800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
19	chr11:46023400-46048200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
20	chr11:46023600-46027000	Enhancers	HUES64 Cell Line	embryonic stem cell
21	chr11:46023600-46041600	Weak transcription	Ovary	ovary
22	chr11:46023600-46046400	Weak transcription	Stomach Smooth Muscle	stomach
23	chr11:46024000-46026800	Enhancers	iPS-20b Cell Line	embryonic stem cell
24	chr11:46024000-46028000	Weak transcription	Brain Cingulate Gyrus	brain
25	chr11:46024800-46042600	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
26	chr11:46025000-46028200	Enhancers	Fetal Lung	lung
27	chr11:46025400-46028400	Weak transcription	Right Atrium	heart
28	chr11:46025600-46027600	Weak transcription	Fetal Heart	heart
29	chr11:46025600-46029200	Weak transcription	Monocytes-CD14+_RO01746	blood
30	chr11:46025600-46031000	Weak transcription	Primary neutrophils fromperipheralblood	blood
31	chr11:46025600-46033600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
32	chr11:46025600-46033600	Weak transcription	HUES6 Cell Line	embryonic stem cell
33	chr11:46025600-46041800	Weak transcription	Primary monocytes fromperipheralblood	blood
34	chr11:46025600-46047400	Weak transcription	HSMMtube	muscle
35	chr11:46025600-46056200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
36	chr11:46025800-46031000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
37	chr11:46026000-46030800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
38	chr11:46026000-46031200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
39	chr11:46026000-46032000	Weak transcription	Colon Smooth Muscle	Colon
40	chr11:46026200-46033400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
41	chr11:46026200-46055600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
42	chr11:46026400-46027800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
43	chr11:46026400-46032400	Weak transcription	Cortex derived primary cultured neurospheres	brain
44	chr11:46026400-46033800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
45	chr11:46026400-46034000	Weak transcription	H1 Cell Line	embryonic stem cell
46	chr11:46026400-46047800	Weak transcription	HSMM	muscle
47	chr11:46026600-46026800	Enhancers	Fetal Stomach	stomach
48	chr11:46026600-46027800	Enhancers	Pancreatic Islets	Pancreatic Islet
49	chr11:46026600-46031200	Weak transcription	K562	blood
50	chr11:46026600-46031400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain

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