Variant report

Variant	rs562431374
Chromosome Location	chr11:47048858-47048859
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 4 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1805201	chr11:46971012-47063429	Weak transcription Enhancers Strong transcription Flanking Bivalent TSS/Enh Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Active TSS Bivalent/Poised TSS	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
2	esv1819852	chr11:46971012-47064542	Enhancers Weak transcription ZNF genes & repeats Strong transcription Bivalent Enhancer Flanking Active TSS Genic enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
3	nsv1043108	chr11:47041565-47117248	Enhancers Weak transcription ZNF genes & repeats Strong transcription Flanking Active TSS Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
4	nsv312	chr11:47047247-47072397	Weak transcription Enhancers ZNF genes & repeats Strong transcription	TF binding region Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:47026800-47080200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr11:47027400-47056000	Weak transcription	Fetal Intestine Small	intestine
3	chr11:47043000-47050000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
4	chr11:47043200-47049000	Weak transcription	Fetal Lung	lung
5	chr11:47043200-47055200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
6	chr11:47043600-47054800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
7	chr11:47043800-47055800	Weak transcription	Cortex derived primary cultured neurospheres	brain
8	chr11:47045800-47056600	Weak transcription	Hela-S3	cervix
9	chr11:47047800-47049000	Weak transcription	Brain Cingulate Gyrus	brain
10	chr11:47047800-47049400	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
11	chr11:47048800-47049200	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
12	chr11:47048800-47049200	Enhancers	Fetal Muscle Leg	muscle
13	chr11:47048800-47058000	Weak transcription	Primary T regulatory cells fromperipheralblood	blood

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links