Variant report

Variant	rs56244386
Chromosome Location	chr1:152236148-152236149
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 57 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:49)

rs_ID	r²[population]
rs11204983	1.00[EUR][1000 genomes]
rs12057680	1.00[EUR][1000 genomes]
rs12060296	1.00[EUR][1000 genomes]
rs12066296	1.00[EUR][1000 genomes]
rs12067755	1.00[EUR][1000 genomes]
rs12078392	1.00[EUR][1000 genomes]
rs12083959	1.00[EUR][1000 genomes]
rs16833865	1.00[EUR][1000 genomes]
rs16833870	1.00[EUR][1000 genomes]
rs16833876	1.00[EUR][1000 genomes]
rs1858481	1.00[EUR][1000 genomes]
rs28655434	1.00[EUR][1000 genomes]
rs3120654	1.00[EUR][1000 genomes]
rs3126087	1.00[EUR][1000 genomes]
rs3126093	1.00[EUR][1000 genomes]
rs3134871	1.00[EUR][1000 genomes]
rs41363352	1.00[EUR][1000 genomes]
rs56024264	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56106510	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56124007	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56156422	1.00[EUR][1000 genomes]
rs57272962	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57760863	1.00[AMR][1000 genomes]
rs57934636	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58132665	1.00[EUR][1000 genomes]
rs58788896	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58823849	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60525930	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60709044	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74126309	1.00[AMR][1000 genomes]
rs74126341	1.00[EUR][1000 genomes]
rs74126343	1.00[EUR][1000 genomes]
rs74127703	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74127885	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74127887	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74127894	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74127895	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74127917	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74127918	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74127942	1.00[AMR][1000 genomes]
rs74129414	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74129429	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74129447	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74129458	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74129459	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74129463	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74129464	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74129466	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74129507	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv547853	chr1:152008671-152236760	Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription Bivalent/Poised TSS Active TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	83 gene(s)	inside rSNPs	diseases
2	nsv1014095	chr1:152104486-152454591	Active TSS Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
3	nsv946325	chr1:152221751-152240196	Weak transcription ZNF genes & repeats Enhancers Strong transcription Flanking Active TSS Active TSS	lncRNA	1 gene(s)	inside rSNPs	diseases
4	esv3372510	chr1:152232828-152237226	ZNF genes & repeats Weak transcription	n/a	n/a	inside rSNPs	diseases
5	esv3422049	chr1:152234328-152238726	Weak transcription ZNF genes & repeats	n/a	n/a	inside rSNPs	diseases
6	nsv547855	chr1:152235044-152240504	Weak transcription ZNF genes & repeats	n/a	n/a	inside rSNPs	diseases
7	nsv547856	chr1:152235044-152251714	Weak transcription ZNF genes & repeats	n/a	n/a	inside rSNPs	diseases
8	nsv547857	chr1:152235564-152240504	Weak transcription ZNF genes & repeats	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:152231200-152236400	Weak transcription	Fetal Kidney	kidney
2	chr1:152236000-152236200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin

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