Variant report

Variant	rs562460060
Chromosome Location	chr1:76719493-76719494
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 7 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv870621	chr1:76620313-76997071	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv1008763	chr1:76692057-76723417	Weak transcription Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Active TSS Bivalent Enhancer Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
3	nsv1001452	chr1:76692057-76724652	Enhancers Weak transcription Genic enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Active TSS Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
4	nsv546584	chr1:76693367-76721164	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Strong transcription Active TSS Genic enhancers Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
5	nsv523526	chr1:76695356-76721164	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
6	nsv1499	chr1:76704981-76749688	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
7	nsv534168	chr1:76718950-77039352	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:29 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:76713400-76720200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
2	chr1:76714000-76719800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
3	chr1:76714200-76719600	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
4	chr1:76716400-76719600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
5	chr1:76716400-76722000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr1:76716400-76723200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
7	chr1:76716600-76719800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
8	chr1:76716600-76723600	Weak transcription	Fetal Muscle Leg	muscle
9	chr1:76716800-76719600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
10	chr1:76716800-76719600	Weak transcription	Cortex derived primary cultured neurospheres	brain
11	chr1:76717000-76719600	Weak transcription	HUES6 Cell Line	embryonic stem cell
12	chr1:76717200-76719600	Weak transcription	HUES48 Cell Line	embryonic stem cell
13	chr1:76717200-76719600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
14	chr1:76717400-76720000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
15	chr1:76717600-76722000	Weak transcription	Fetal Lung	lung
16	chr1:76718000-76719800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
17	chr1:76718200-76719600	Enhancers	Fetal Adrenal Gland	Adrenal Gland
18	chr1:76718200-76719800	Weak transcription	Brain Hippocampus Middle	brain
19	chr1:76718400-76719600	Weak transcription	Brain Cingulate Gyrus	brain
20	chr1:76718600-76722000	Weak transcription	Small Intestine	intestine
21	chr1:76719000-76719600	Enhancers	HUVEC	blood vessel
22	chr1:76719000-76720600	Enhancers	HUES64 Cell Line	embryonic stem cell
23	chr1:76719200-76721000	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
24	chr1:76719400-76719600	Enhancers	Aorta	Aorta
25	chr1:76719400-76719600	Enhancers	Fetal Thymus	thymus
26	chr1:76719400-76720000	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
27	chr1:76719400-76720000	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
28	chr1:76719400-76720000	Enhancers	NHDF-Ad	bronchial
29	chr1:76719400-76722000	Enhancers	Primary T cells from cord blood	blood

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