Variant report

Variant	rs56251207
Chromosome Location	chr14:70589274-70589275
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 79 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:78)

rs_ID	r²[population]
rs10444731	0.88[AMR][1000 genomes];0.99[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs10444732	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10444733	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10483824	0.90[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs11158837	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs11158839	0.90[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs11158840	0.90[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs1122707	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1122708	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11850592	0.86[AMR][1000 genomes];0.99[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs12147147	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12147341	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12147621	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12147634	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17107798	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs17107893	0.86[AMR][1000 genomes];0.99[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs17107920	0.86[AMR][1000 genomes];0.99[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs17107925	0.82[AMR][1000 genomes];0.98[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs17175527	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17175597	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17175695	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17175848	0.90[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs17175939	0.90[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs17175960	0.97[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs17765251	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs17765304	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17765370	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs17765449	0.90[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs17765575	0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs17765586	0.90[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs2605	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4902779	0.94[EUR][1000 genomes]
rs56266899	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56374433	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56935411	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs60552299	0.91[EUR][1000 genomes]
rs61977430	0.98[EUR][1000 genomes]
rs61977438	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61977439	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61977440	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61977443	0.98[EUR][1000 genomes]
rs61977444	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61977445	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61977446	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61977448	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61977449	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61977450	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs61977451	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61977453	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61977454	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61977455	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61977456	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61977457	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61978160	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs61978162	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61978164	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61978165	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61978175	0.90[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs61978178	0.90[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs61978184	0.82[AMR][1000 genomes];0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs61978185	0.82[AMR][1000 genomes];0.92[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs61978186	0.90[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs61978187	0.90[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs61978188	0.86[AMR][1000 genomes];0.99[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs61978189	0.86[AMR][1000 genomes];0.99[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs7140688	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7143465	0.86[AMR][1000 genomes];0.99[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7144377	0.90[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs7148926	0.90[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs7149304	0.90[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs7158149	0.86[AMR][1000 genomes];0.99[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7158867	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7159555	0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs8011864	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs8015011	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs8015205	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs8018678	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs998306	0.90[AMR][1000 genomes];0.99[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832826	chr14:70559589-70723464	Bivalent/Poised TSS Bivalent Enhancer Enhancers Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:70579800-70599400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
2	chr14:70583600-70599600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
3	chr14:70586600-70589400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
4	chr14:70587200-70589400	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr14:70587800-70589400	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
6	chr14:70588000-70589400	Enhancers	H9 Cell Line	embryonic stem cell
7	chr14:70588000-70589400	Enhancers	iPS-18 Cell Line	embryonic stem cell
8	chr14:70588000-70589400	Enhancers	Cortex derived primary cultured neurospheres	brain
9	chr14:70588400-70589400	Enhancers	iPS-20b Cell Line	embryonic stem cell
10	chr14:70589000-70591000	Weak transcription	Skeletal Muscle Female	skeletal muscle
11	chr14:70589200-70590600	Weak transcription	Psoas Muscle	Psoas

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links