Variant report

Variant	rs56254605
Chromosome Location	chr11:17062164-17062165
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 37 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:35)

rs_ID	r²[population]
rs11024132	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11600230	0.82[EUR][1000 genomes]
rs11603461	1.00[ASN][1000 genomes]
rs11604470	1.00[ASN][1000 genomes]
rs11604561	1.00[ASN][1000 genomes]
rs11605779	0.89[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11827341	0.95[AFR][1000 genomes];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12417522	0.96[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12418260	1.00[ASN][1000 genomes]
rs12419179	0.89[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs1544609	1.00[ASN][1000 genomes]
rs28845191	0.89[AFR][1000 genomes];0.92[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs35297605	1.00[ASN][1000 genomes]
rs55763300	1.00[ASN][1000 genomes]
rs55928651	0.90[AFR][1000 genomes];0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57726107	0.80[EUR][1000 genomes]
rs59007596	0.86[ASN][1000 genomes]
rs59075718	1.00[ASN][1000 genomes]
rs61762011	1.00[ASN][1000 genomes]
rs61879669	1.00[ASN][1000 genomes]
rs61879670	0.91[AFR][1000 genomes];0.92[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61879673	1.00[ASN][1000 genomes]
rs61879686	1.00[ASN][1000 genomes]
rs61879698	1.00[ASN][1000 genomes]
rs61879699	1.00[ASN][1000 genomes]
rs61879703	1.00[ASN][1000 genomes]
rs61879714	1.00[ASN][1000 genomes]
rs61879715	1.00[ASN][1000 genomes]
rs61879721	1.00[ASN][1000 genomes]
rs61879731	1.00[ASN][1000 genomes]
rs61881312	0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72869096	1.00[ASN][1000 genomes]
rs72870837	0.89[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs72870840	0.89[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7481457	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv467711	chr11:17027555-17320797	Weak transcription Strong transcription Active TSS Genic enhancers Flanking Active TSS Enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	55 gene(s)	inside rSNPs	diseases
2	nsv553568	chr11:17027555-17320797	Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	55 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:17059000-17067200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell

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