Variant report

Variant	rs56255416
Chromosome Location	chr11:70851841-70851842
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 31 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs11232452	1.00[EUR][1000 genomes]
rs11232477	1.00[EUR][1000 genomes]
rs11232508	1.00[EUR][1000 genomes]
rs11822742	1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs11826649	1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs3934693	1.00[EUR][1000 genomes]
rs4072326	1.00[EUR][1000 genomes]
rs4943820	1.00[EUR][1000 genomes]
rs4943871	1.00[EUR][1000 genomes]
rs55656100	0.82[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs55690281	1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs55712817	1.00[EUR][1000 genomes]
rs55757613	0.81[ASN][1000 genomes]
rs55788978	1.00[EUR][1000 genomes]
rs55836628	0.82[EUR][1000 genomes]
rs55897315	1.00[EUR][1000 genomes]
rs55928066	1.00[EUR][1000 genomes]
rs56162839	1.00[EUR][1000 genomes]
rs56220831	0.82[EUR][1000 genomes]
rs56368604	1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs57007124	1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs58661988	0.82[EUR][1000 genomes]
rs58713366	0.83[ASN][1000 genomes]
rs58984468	1.00[EUR][1000 genomes]
rs59894456	1.00[EUR][1000 genomes]
rs61037105	1.00[EUR][1000 genomes]
rs66668954	0.81[ASN][1000 genomes]
rs73521132	0.82[EUR][1000 genomes]
rs73521141	0.82[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7944885	0.81[AMR][1000 genomes];0.82[EUR][1000 genomes];0.88[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1048123	chr11:70795222-71231382	Enhancers Weak transcription Flanking Active TSS Strong transcription Genic enhancers Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	21 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:40 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:70824000-70861600	Weak transcription	A549	lung
2	chr11:70832200-70860600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
3	chr11:70832200-70863600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
4	chr11:70832200-70864400	Weak transcription	HUES48 Cell Line	embryonic stem cell
5	chr11:70841200-70857400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
6	chr11:70842400-70860600	Weak transcription	Fetal Intestine Large	intestine
7	chr11:70842600-70860800	Weak transcription	H9 Cell Line	embryonic stem cell
8	chr11:70843200-70856800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
9	chr11:70843400-70857200	Weak transcription	H1 Cell Line	embryonic stem cell
10	chr11:70846000-70852800	Strong transcription	HepG2	liver
11	chr11:70848400-70852400	Strong transcription	Fetal Intestine Small	intestine
12	chr11:70848800-70852000	Enhancers	Brain Anterior Caudate	brain
13	chr11:70849600-70852200	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
14	chr11:70849800-70852000	Enhancers	Fetal Muscle Leg	muscle
15	chr11:70849800-70852200	Enhancers	Cortex derived primary cultured neurospheres	brain
16	chr11:70849800-70852200	Enhancers	Brain Angular Gyrus	brain
17	chr11:70849800-70852200	Enhancers	Brain Germinal Matrix	brain
18	chr11:70849800-70852200	Enhancers	Brain Hippocampus Middle	brain
19	chr11:70849800-70852200	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
20	chr11:70849800-70852200	Enhancers	Brain Substantia Nigra	brain
21	chr11:70850000-70852000	Enhancers	HSMM	muscle
22	chr11:70850000-70852200	Bivalent Enhancer	Fetal Muscle Trunk	muscle
23	chr11:70850400-70852000	Enhancers	Liver	Liver
24	chr11:70850400-70852200	Enhancers	Brain Inferior Temporal Lobe	brain
25	chr11:70850400-70852400	Enhancers	Pancreas	Pancrea
26	chr11:70850800-70852200	Enhancers	Breast Myoepithelial Primary Cells	Breast
27	chr11:70850800-70852200	Enhancers	Lung	lung
28	chr11:70850800-70852200	Enhancers	Stomach Mucosa	stomach
29	chr11:70850800-70852400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
30	chr11:70850800-70852400	Enhancers	HMEC	breast
31	chr11:70851200-70852000	Flanking Active TSS	Brain Cingulate Gyrus	brain
32	chr11:70851400-70857600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
33	chr11:70851600-70853000	Enhancers	Esophagus	oesophagus
34	chr11:70851600-70855000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
35	chr11:70851600-70855200	Weak transcription	Fetal Stomach	stomach
36	chr11:70851600-70857400	Weak transcription	Gastric	stomach
37	chr11:70851600-70857600	Weak transcription	Placenta	Placenta
38	chr11:70851800-70852200	Strong transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
39	chr11:70851800-70852200	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
40	chr11:70851800-70855200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin

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