Variant report

Variant	rs56261601
Chromosome Location	chr11:17393046-17393047
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:17392803..17397590-chr11:17399104..17403536,6	K562	blood:
2	chr11:17392236..17395328-chr11:17396635..17401653,4	K562	blood:
3	chr11:17372004..17376706-chr11:17389916..17393602,5	K562	blood:
4	chr11:17373389..17376552-chr11:17389035..17393180,4	K562	blood:
5	chr11:17386801..17391541-chr11:17392806..17398479,7	K562	blood:

Variant related genes	Relation type
ENSG00000260196	Chromatin interaction
ENSG00000188211	Chromatin interaction

Extended variants
information (count: 27 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs11827039	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11828705	0.91[AFR][1000 genomes];0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12292288	1.00[ASN][1000 genomes]
rs12293803	1.00[ASN][1000 genomes]
rs12422139	1.00[ASN][1000 genomes]
rs17846719	1.00[ASN][1000 genomes]
rs17846760	1.00[ASN][1000 genomes]
rs17846764	1.00[ASN][1000 genomes]
rs17846770	1.00[ASN][1000 genomes]
rs2214285	0.81[AFR][1000 genomes];0.85[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55898520	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56003324	1.00[ASN][1000 genomes]
rs56731620	1.00[ASN][1000 genomes]
rs6486364	0.99[AFR][1000 genomes];0.98[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6486365	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72865007	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72865016	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72865031	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72865036	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72865050	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72865058	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72866820	1.00[ASN][1000 genomes]
rs757111	1.00[ASN][1000 genomes]
rs7927686	1.00[ASN][1000 genomes]
rs7937774	1.00[ASN][1000 genomes]
rs8192691	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv469895	chr11:17368270-17584220	Weak transcription Bivalent Enhancer Genic enhancers Enhancers Bivalent/Poised TSS Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:82 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:17382400-17401200	ZNF genes & repeats	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr11:17387200-17398600	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
3	chr11:17387600-17393200	Strong transcription	Foreskin Fibroblast Primary Cells skin02	Skin
4	chr11:17388200-17395200	ZNF genes & repeats	Thymus	Thymus
5	chr11:17388200-17395800	ZNF genes & repeats	H9 Derived Neuron Cultured Cells	ES cell derived
6	chr11:17388200-17396800	ZNF genes & repeats	Fetal Intestine Small	intestine
7	chr11:17388600-17396000	ZNF genes & repeats	Cortex derived primary cultured neurospheres	brain
8	chr11:17388600-17396800	ZNF genes & repeats	Dnd41	blood
9	chr11:17388800-17394200	ZNF genes & repeats	HepG2	liver
10	chr11:17388800-17395200	ZNF genes & repeats	Spleen	Spleen
11	chr11:17388800-17395600	ZNF genes & repeats	Sigmoid Colon	Sigmoid Colon
12	chr11:17388800-17395800	ZNF genes & repeats	HSMM	muscle
13	chr11:17388800-17395800	ZNF genes & repeats	NHEK	skin
14	chr11:17388800-17396000	ZNF genes & repeats	Adipose Nuclei	Adipose
15	chr11:17389000-17395800	ZNF genes & repeats	Primary hematopoietic stem cells short term culture	blood
16	chr11:17389000-17398200	ZNF genes & repeats	Ovary	ovary
17	chr11:17389600-17395200	ZNF genes & repeats	Colonic Mucosa	Colon
18	chr11:17389600-17395400	ZNF genes & repeats	HSMMtube	muscle
19	chr11:17389600-17395800	ZNF genes & repeats	Monocytes-CD14+_RO01746	blood
20	chr11:17389600-17396000	ZNF genes & repeats	Fetal Brain Female	brain
21	chr11:17389800-17394200	ZNF genes & repeats	Muscle Satellite Cultured Cells	--
22	chr11:17389800-17394800	ZNF genes & repeats	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
23	chr11:17389800-17394800	ZNF genes & repeats	Primary monocytes fromperipheralblood	blood
24	chr11:17389800-17395000	ZNF genes & repeats	Foreskin Melanocyte Primary Cells skin01	Skin
25	chr11:17389800-17395200	ZNF genes & repeats	Foreskin Keratinocyte Primary Cells skin02	Skin
26	chr11:17389800-17395200	ZNF genes & repeats	Foreskin Keratinocyte Primary Cells skin03	Skin
27	chr11:17389800-17395200	ZNF genes & repeats	Rectal Smooth Muscle	rectum
28	chr11:17389800-17395600	ZNF genes & repeats	Aorta	Aorta
29	chr11:17389800-17395800	ZNF genes & repeats	Brain Germinal Matrix	brain
30	chr11:17389800-17397000	ZNF genes & repeats	Ganglion Eminence derived primary cultured neurospheres	brain
31	chr11:17390000-17394200	ZNF genes & repeats	Rectal Mucosa Donor 31	rectum
32	chr11:17390000-17394600	ZNF genes & repeats	Brain Substantia Nigra	brain
33	chr11:17390000-17394600	ZNF genes & repeats	K562	blood
34	chr11:17390000-17395000	ZNF genes & repeats	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
35	chr11:17390000-17395000	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Female	--
36	chr11:17390000-17395000	ZNF genes & repeats	Rectal Mucosa Donor 29	rectum
37	chr11:17390000-17395200	ZNF genes & repeats	NHDF-Ad	bronchial
38	chr11:17390000-17395800	ZNF genes & repeats	Duodenum Mucosa	Duodenum
39	chr11:17390000-17395800	ZNF genes & repeats	Duodenum Smooth Muscle	Duodenum
40	chr11:17390000-17395800	ZNF genes & repeats	Left Ventricle	heart
41	chr11:17390000-17397400	ZNF genes & repeats	Breast Myoepithelial Primary Cells	Breast
42	chr11:17390200-17394600	ZNF genes & repeats	HMEC	breast
43	chr11:17390200-17394800	ZNF genes & repeats	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
44	chr11:17390200-17395000	ZNF genes & repeats	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
45	chr11:17390200-17395600	ZNF genes & repeats	Small Intestine	intestine
46	chr11:17390200-17395800	ZNF genes & repeats	Primary Natural Killer cells fromperipheralblood	blood
47	chr11:17390400-17394400	ZNF genes & repeats	Primary neutrophils fromperipheralblood	blood
48	chr11:17390400-17394400	ZNF genes & repeats	NHLF	lung
49	chr11:17390400-17394600	ZNF genes & repeats	Primary T killer naive cells fromperipheralblood	blood
50	chr11:17390400-17395000	ZNF genes & repeats	Primary T helper cells fromperipheralblood	blood

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