Variant report

Variant	rs562643671
Chromosome Location	chr3:142769051-142769052
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:142768453..142771583-chr3:142772247..142775036,3	MCF-7	breast:

Extended variants
information (count: 6 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv877562	chr3:142573789-142846370	Flanking Bivalent TSS/Enh Flanking Active TSS Strong transcription Enhancers Weak transcription Bivalent Enhancer Active TSS Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
2	esv2757893	chr3:142720230-142962932	Enhancers Active TSS Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Weak transcription Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
3	esv2759183	chr3:142720230-142964373	Strong transcription Weak transcription Enhancers Bivalent Enhancer Active TSS Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
4	nsv591921	chr3:142762487-142841740	Bivalent/Poised TSS Active TSS Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Enhancers Bivalent Enhancer ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	11 gene(s)	inside rSNPs	diseases
5	nsv1004467	chr3:142768867-142800605	Weak transcription Strong transcription Enhancers Flanking Active TSS Genic enhancers ZNF genes & repeats Active TSS	Chromatin interactive region miRNA target site	2 gene(s)	inside rSNPs	diseases
6	nsv1004682	chr3:142768867-142804154	Enhancers Weak transcription Strong transcription Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer	Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:125 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:142729200-142785200	Weak transcription	Aorta	Aorta
2	chr3:142734400-142785200	Weak transcription	Esophagus	oesophagus
3	chr3:142740000-142769200	Weak transcription	Gastric	stomach
4	chr3:142749000-142784200	Weak transcription	Small Intestine	intestine
5	chr3:142749200-142779000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
6	chr3:142754200-142769800	Weak transcription	Colonic Mucosa	Colon
7	chr3:142756000-142774400	Weak transcription	Stomach Mucosa	stomach
8	chr3:142756200-142769200	Weak transcription	Placenta Amnion	Placenta Amnion
9	chr3:142761800-142776600	Weak transcription	Pancreatic Islets	Pancreatic Islet
10	chr3:142763000-142769400	Weak transcription	NHEK	skin
11	chr3:142763400-142787000	Weak transcription	Spleen	Spleen
12	chr3:142763600-142769200	Weak transcription	Brain Cingulate Gyrus	brain
13	chr3:142763600-142770000	Weak transcription	NHLF	lung
14	chr3:142763800-142769200	Weak transcription	HUVEC	blood vessel
15	chr3:142763800-142769400	Weak transcription	HSMMtube	muscle
16	chr3:142763800-142772600	Weak transcription	Psoas Muscle	Psoas
17	chr3:142763800-142773200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
18	chr3:142764000-142769400	Weak transcription	Brain Hippocampus Middle	brain
19	chr3:142764200-142784200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
20	chr3:142764600-142769200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
21	chr3:142764600-142772800	Weak transcription	Brain Inferior Temporal Lobe	brain
22	chr3:142764600-142775200	Weak transcription	Brain Angular Gyrus	brain
23	chr3:142764800-142769200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
24	chr3:142764800-142769200	Weak transcription	Brain Anterior Caudate	brain
25	chr3:142764800-142769200	Weak transcription	Brain Substantia Nigra	brain
26	chr3:142764800-142769200	Weak transcription	Sigmoid Colon	Sigmoid Colon
27	chr3:142764800-142769200	Weak transcription	HepG2	liver
28	chr3:142764800-142769200	Weak transcription	NHDF-Ad	bronchial
29	chr3:142764800-142769400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
30	chr3:142764800-142769400	Weak transcription	Colon Smooth Muscle	Colon
31	chr3:142764800-142769400	Weak transcription	Stomach Smooth Muscle	stomach
32	chr3:142764800-142769600	Weak transcription	Fetal Kidney	kidney
33	chr3:142764800-142770600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
34	chr3:142764800-142770800	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
35	chr3:142764800-142771400	Weak transcription	Brain Germinal Matrix	brain
36	chr3:142764800-142772600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
37	chr3:142764800-142779600	Weak transcription	Fetal Brain Male	brain
38	chr3:142765000-142769200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
39	chr3:142765000-142769200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
40	chr3:142765000-142769200	Weak transcription	Fetal Lung	lung
41	chr3:142765000-142769200	Weak transcription	NH-A	brain
42	chr3:142765000-142770200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
43	chr3:142765000-142771200	Weak transcription	Muscle Satellite Cultured Cells	--
44	chr3:142765000-142782200	Weak transcription	Fetal Heart	heart
45	chr3:142765400-142791600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
46	chr3:142766600-142772200	Strong transcription	Fetal Stomach	stomach
47	chr3:142766600-142775000	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
48	chr3:142766600-142776000	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
49	chr3:142766600-142776000	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
50	chr3:142766600-142776000	Strong transcription	Fetal Adrenal Gland	Adrenal Gland

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