Variant report

Variant	rs562680552
Chromosome Location	chr7:101927441-101927442
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr7:101924860..101932400-chr7:102029531..102038487,21	MCF-7	breast:
2	chr7:101922653..101924580-chr7:101925750..101927618,2	K562	blood:
3	chr7:101914536..101919891-chr7:101927361..101932016,8	MCF-7	breast:
4	chr7:101924242..101933059-chr7:102034727..102040076,14	MCF-7	breast:
5	chr7:101912928..101918938-chr7:101926951..101931541,5	K562	blood:
6	chr7:101927301..101930290-chr7:102022735..102024275,2	MCF-7	breast:
7	chr7:101926103..101929302-chr7:102034428..102037305,4	K562	blood:

Variant related genes	Relation type
ENSG00000257923	Chromatin interaction
ENSG00000128563	Chromatin interaction
ENSG00000239486	Chromatin interaction

Extended variants
information (count: 20 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:20 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv464662	chr7:101912320-101949128	Strong transcription Weak transcription Bivalent Enhancer Active TSS Enhancers Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region miRNA	24 gene(s)	inside rSNPs	diseases
2	nsv464663	chr7:101912320-101949128	Flanking Active TSS Weak transcription Active TSS Enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region miRNA	24 gene(s)	inside rSNPs	diseases
3	nsv607996	chr7:101912320-101949128	Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Genic enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region miRNA	24 gene(s)	inside rSNPs	diseases
4	nsv607997	chr7:101912320-101949128	Enhancers Genic enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region miRNA	24 gene(s)	inside rSNPs	diseases
5	esv2758126	chr7:101912320-102005026	Genic enhancers Enhancers Active TSS Weak transcription Flanking Active TSS Strong transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	29 gene(s)	inside rSNPs	diseases
6	esv2759548	chr7:101912320-102005026	Active TSS Enhancers Weak transcription Strong transcription Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	29 gene(s)	inside rSNPs	diseases
7	esv1814780	chr7:101912320-102375950	Weak transcription Active TSS Flanking Active TSS Enhancers Strong transcription Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	61 gene(s)	inside rSNPs	diseases
8	esv1819566	chr7:101912320-102375950	Weak transcription Flanking Active TSS Bivalent Enhancer Strong transcription Active TSS Enhancers Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	61 gene(s)	inside rSNPs	diseases
9	esv1822347	chr7:101912320-102375950	Enhancers Flanking Active TSS Weak transcription Strong transcription Active TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	61 gene(s)	inside rSNPs	diseases
10	esv1825708	chr7:101912320-102375950	Enhancers Flanking Active TSS Weak transcription Strong transcription Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	61 gene(s)	inside rSNPs	diseases
11	esv1842898	chr7:101912320-102375950	Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	61 gene(s)	inside rSNPs	diseases
12	esv1847418	chr7:101912320-102375950	Active TSS Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Genic enhancers Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	61 gene(s)	inside rSNPs	diseases
13	nsv427798	chr7:101912320-102375950	Flanking Active TSS Strong transcription Enhancers Weak transcription Genic enhancers Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	61 gene(s)	inside rSNPs	diseases
14	nsv428182	chr7:101912320-102375950	Strong transcription Weak transcription Enhancers Genic enhancers Flanking Active TSS Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	61 gene(s)	inside rSNPs	diseases
15	nsv1016563	chr7:101912320-102695860	Weak transcription Genic enhancers Flanking Active TSS Enhancers Strong transcription Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	76 gene(s)	inside rSNPs	diseases
16	nsv1028438	chr7:101912320-102704135	Strong transcription Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	76 gene(s)	inside rSNPs	diseases
17	esv1822373	chr7:101913187-101969458	Enhancers Active TSS Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Genic enhancers Strong transcription Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	24 gene(s)	inside rSNPs	diseases
18	nsv888828	chr7:101921289-101939759	Enhancers Weak transcription Active TSS Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region miRNA	23 gene(s)	inside rSNPs	diseases
19	nsv888829	chr7:101926788-101946385	Active TSS Enhancers Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Weak transcription Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region miRNA	22 gene(s)	inside rSNPs	diseases
20	nsv888830	chr7:101926788-101957518	Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region miRNA	22 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:72 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:101892800-101928000	Weak transcription	Esophagus	oesophagus
2	chr7:101892800-101928400	Weak transcription	Right Ventricle	heart
3	chr7:101897600-101928000	Weak transcription	Primary T cells from cord blood	blood
4	chr7:101898000-101928200	Weak transcription	Stomach Smooth Muscle	stomach
5	chr7:101904600-101928200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
6	chr7:101908000-101929200	Weak transcription	Gastric	stomach
7	chr7:101910200-101928400	Weak transcription	Liver	Liver
8	chr7:101915800-101928000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
9	chr7:101915800-101929000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
10	chr7:101917400-101929400	Weak transcription	HMEC	breast
11	chr7:101917600-101928000	Weak transcription	Colonic Mucosa	Colon
12	chr7:101918800-101929000	Weak transcription	Stomach Mucosa	stomach
13	chr7:101919000-101928200	Weak transcription	Lung	lung
14	chr7:101923000-101928000	Weak transcription	Fetal Lung	lung
15	chr7:101923200-101927600	Weak transcription	Primary T helper cells PMA-I stimulated	--
16	chr7:101923200-101927800	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
17	chr7:101923200-101927800	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
18	chr7:101923200-101927800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
19	chr7:101923200-101927800	Weak transcription	Duodenum Mucosa	Duodenum
20	chr7:101923200-101928000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
21	chr7:101923200-101928000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
22	chr7:101923200-101928000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
23	chr7:101923200-101928000	Weak transcription	Adipose Nuclei	Adipose
24	chr7:101923200-101928000	Weak transcription	Brain Hippocampus Middle	brain
25	chr7:101923200-101928000	Weak transcription	Skeletal Muscle Male	skeletal muscle
26	chr7:101923200-101928400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
27	chr7:101923200-101928400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
28	chr7:101923200-101928400	Weak transcription	Brain Cingulate Gyrus	brain
29	chr7:101923200-101928400	Weak transcription	Duodenum Smooth Muscle	Duodenum
30	chr7:101923200-101928400	Weak transcription	Fetal Intestine Large	intestine
31	chr7:101923200-101929200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
32	chr7:101923200-101929200	Weak transcription	A549	lung
33	chr7:101923200-101929400	Weak transcription	Rectal Mucosa Donor 31	rectum
34	chr7:101923400-101927800	Weak transcription	Placenta	Placenta
35	chr7:101923400-101927800	Weak transcription	Skeletal Muscle Female	skeletal muscle
36	chr7:101923400-101927800	Weak transcription	Spleen	Spleen
37	chr7:101923400-101928200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
38	chr7:101923400-101928200	Weak transcription	Fetal Brain Male	brain
39	chr7:101923400-101928400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
40	chr7:101923400-101928400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
41	chr7:101923400-101928400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
42	chr7:101923400-101928400	Weak transcription	Placenta Amnion	Placenta Amnion
43	chr7:101923400-101928400	Weak transcription	Right Atrium	heart
44	chr7:101923400-101928600	Weak transcription	Fetal Brain Female	brain
45	chr7:101923400-101928800	Weak transcription	Cortex derived primary cultured neurospheres	brain
46	chr7:101923400-101929000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
47	chr7:101923400-101929400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
48	chr7:101923600-101928400	Weak transcription	Brain Germinal Matrix	brain
49	chr7:101924800-101928400	Weak transcription	H1 Cell Line	embryonic stem cell
50	chr7:101925800-101927800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived

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