Variant report

Variant	rs562699941
Chromosome Location	chr3:142769754-142769755
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:142768453..142771583-chr3:142772247..142775036,3	MCF-7	breast:
2	chr3:142769496..142773173-chr3:142775914..142778153,3	K562	blood:

Extended variants
information (count: 6 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv877562	chr3:142573789-142846370	Flanking Bivalent TSS/Enh Flanking Active TSS Strong transcription Enhancers Weak transcription Bivalent Enhancer Active TSS Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
2	esv2757893	chr3:142720230-142962932	Enhancers Active TSS Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Weak transcription Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
3	esv2759183	chr3:142720230-142964373	Strong transcription Weak transcription Enhancers Bivalent Enhancer Active TSS Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
4	nsv591921	chr3:142762487-142841740	Bivalent/Poised TSS Active TSS Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Enhancers Bivalent Enhancer ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	11 gene(s)	inside rSNPs	diseases
5	nsv1004467	chr3:142768867-142800605	Weak transcription Strong transcription Enhancers Flanking Active TSS Genic enhancers ZNF genes & repeats Active TSS	Chromatin interactive region miRNA target site	2 gene(s)	inside rSNPs	diseases
6	nsv1004682	chr3:142768867-142804154	Enhancers Weak transcription Strong transcription Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer	Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:125 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:142729200-142785200	Weak transcription	Aorta	Aorta
2	chr3:142734400-142785200	Weak transcription	Esophagus	oesophagus
3	chr3:142749000-142784200	Weak transcription	Small Intestine	intestine
4	chr3:142749200-142779000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
5	chr3:142754200-142769800	Weak transcription	Colonic Mucosa	Colon
6	chr3:142756000-142774400	Weak transcription	Stomach Mucosa	stomach
7	chr3:142761800-142776600	Weak transcription	Pancreatic Islets	Pancreatic Islet
8	chr3:142763400-142787000	Weak transcription	Spleen	Spleen
9	chr3:142763600-142770000	Weak transcription	NHLF	lung
10	chr3:142763800-142772600	Weak transcription	Psoas Muscle	Psoas
11	chr3:142763800-142773200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
12	chr3:142764200-142784200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
13	chr3:142764600-142772800	Weak transcription	Brain Inferior Temporal Lobe	brain
14	chr3:142764600-142775200	Weak transcription	Brain Angular Gyrus	brain
15	chr3:142764800-142770600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
16	chr3:142764800-142770800	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
17	chr3:142764800-142771400	Weak transcription	Brain Germinal Matrix	brain
18	chr3:142764800-142772600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
19	chr3:142764800-142779600	Weak transcription	Fetal Brain Male	brain
20	chr3:142765000-142770200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
21	chr3:142765000-142771200	Weak transcription	Muscle Satellite Cultured Cells	--
22	chr3:142765000-142782200	Weak transcription	Fetal Heart	heart
23	chr3:142765400-142791600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
24	chr3:142766600-142772200	Strong transcription	Fetal Stomach	stomach
25	chr3:142766600-142775000	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
26	chr3:142766600-142776000	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
27	chr3:142766600-142776000	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
28	chr3:142766600-142776000	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
29	chr3:142766800-142770000	Strong transcription	GM12878-XiMat	blood
30	chr3:142766800-142771600	Strong transcription	H9 Cell Line	embryonic stem cell
31	chr3:142766800-142772600	Strong transcription	Duodenum Mucosa	Duodenum
32	chr3:142766800-142775400	Strong transcription	Fetal Muscle Leg	muscle
33	chr3:142766800-142776000	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
34	chr3:142766800-142776200	Strong transcription	HUES6 Cell Line	embryonic stem cell
35	chr3:142766800-142776200	Strong transcription	iPS-20b Cell Line	embryonic stem cell
36	chr3:142766800-142776200	Strong transcription	Rectal Mucosa Donor 29	rectum
37	chr3:142766800-142776200	Strong transcription	Rectal Mucosa Donor 31	rectum
38	chr3:142766800-142776200	Strong transcription	Osteobl	bone
39	chr3:142766800-142776400	Strong transcription	Breast Myoepithelial Primary Cells	Breast
40	chr3:142766800-142777000	Strong transcription	HMEC	breast
41	chr3:142766800-142777400	Strong transcription	Hela-S3	cervix
42	chr3:142766800-142778000	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
43	chr3:142766800-142778000	Strong transcription	iPS-18 Cell Line	embryonic stem cell
44	chr3:142766800-142778000	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
45	chr3:142766800-142778000	Strong transcription	Fetal Intestine Large	intestine
46	chr3:142766800-142778200	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
47	chr3:142766800-142778200	Strong transcription	Fetal Thymus	thymus
48	chr3:142766800-142778800	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
49	chr3:142766800-142778800	Strong transcription	Monocytes-CD14+_RO01746	blood
50	chr3:142766800-142779000	Strong transcription	HUES64 Cell Line	embryonic stem cell

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