Variant report

Variant	rs56277217
Chromosome Location	chr7:101832390-101832391
allele	A/C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr7:101832298-101832520	K562	blood:	n/a	n/a

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:101832204..101836272-chr7:101837691..101841173,4	K562	blood:

Variant related genes	Relation type
ENSG00000258093	TF binding region
ENSG00000256295	TF binding region

rs_ID	r²[population]
rs10235870	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10241766	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10259866	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10260022	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10268463	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10269192	1.00[AMR][1000 genomes]

Chromatin state (count:123 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:101797800-101852200	Weak transcription	NHEK	skin
2	chr7:101800400-101850000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
3	chr7:101800600-101851800	Strong transcription	Fetal Intestine Small	intestine
4	chr7:101801200-101864000	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
5	chr7:101805400-101862200	Strong transcription	Primary neutrophils fromperipheralblood	blood
6	chr7:101808200-101840200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
7	chr7:101808400-101868400	Strong transcription	Thymus	Thymus
8	chr7:101812400-101860800	Strong transcription	Primary hematopoietic stem cells short term culture	blood
9	chr7:101812600-101863200	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
10	chr7:101812600-101867000	Strong transcription	Primary monocytes fromperipheralblood	blood
11	chr7:101812600-101867000	Strong transcription	Monocytes-CD14+_RO01746	blood
12	chr7:101813200-101852000	Weak transcription	NHDF-Ad	bronchial
13	chr7:101813800-101860800	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
14	chr7:101814000-101837000	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
15	chr7:101814000-101863600	Weak transcription	HUVEC	blood vessel
16	chr7:101814200-101858600	Weak transcription	Right Atrium	heart
17	chr7:101814400-101840200	Weak transcription	NH-A	brain
18	chr7:101814600-101837200	Weak transcription	HSMM	muscle
19	chr7:101814600-101840200	Weak transcription	Muscle Satellite Cultured Cells	--
20	chr7:101816000-101832800	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
21	chr7:101816000-101859800	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
22	chr7:101817000-101835400	Weak transcription	K562	blood
23	chr7:101817200-101851200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
24	chr7:101819600-101832800	Weak transcription	Fetal Brain Male	brain
25	chr7:101819600-101837400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
26	chr7:101819800-101832800	Weak transcription	Brain Substantia Nigra	brain
27	chr7:101820600-101838600	Strong transcription	Fetal Intestine Large	intestine
28	chr7:101820600-101860200	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
29	chr7:101821200-101857200	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
30	chr7:101822200-101833200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
31	chr7:101822200-101833200	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
32	chr7:101822200-101833400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
33	chr7:101822800-101832800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
34	chr7:101823200-101832800	Weak transcription	Brain Inferior Temporal Lobe	brain
35	chr7:101823200-101832800	Weak transcription	Rectal Smooth Muscle	rectum
36	chr7:101823200-101833200	Weak transcription	Brain Anterior Caudate	brain
37	chr7:101823200-101833200	Weak transcription	GM12878-XiMat	blood
38	chr7:101823400-101832800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
39	chr7:101823400-101832800	Weak transcription	Fetal Brain Female	brain
40	chr7:101823400-101833000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
41	chr7:101823400-101833000	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
42	chr7:101823400-101833000	Weak transcription	Hela-S3	cervix
43	chr7:101823400-101833200	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
44	chr7:101823400-101833400	Weak transcription	Colon Smooth Muscle	Colon
45	chr7:101823400-101833800	Weak transcription	Brain Cingulate Gyrus	brain
46	chr7:101823400-101853800	Weak transcription	Fetal Kidney	kidney
47	chr7:101824400-101851200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
48	chr7:101824400-101863400	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
49	chr7:101825000-101836400	Strong transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
50	chr7:101825400-101832800	Weak transcription	Ovary	ovary

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