Variant report

Variant	rs56277334
Chromosome Location	chr4:175461901-175461902
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs10000806	0.91[ASN][1000 genomes]
rs10009146	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10011444	0.90[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2253349	0.91[ASN][1000 genomes]
rs2253360	0.91[ASN][1000 genomes]
rs2253442	0.91[ASN][1000 genomes]
rs2262515	0.91[ASN][1000 genomes]
rs2555642	0.99[ASN][1000 genomes]
rs2555643	0.99[ASN][1000 genomes]
rs2555672	0.91[ASN][1000 genomes]
rs2555673	0.91[ASN][1000 genomes]
rs2555674	0.91[ASN][1000 genomes]
rs62332169	0.82[EUR][1000 genomes]
rs62332188	0.89[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6811079	0.89[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6817069	0.87[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6844275	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9990951	0.99[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869116	chr4:175231090-175801761	Flanking Active TSS Enhancers Genic enhancers Weak transcription Bivalent/Poised TSS Active TSS Strong transcription Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	13 gene(s)	inside rSNPs	diseases
2	nsv525487	chr4:175400104-175470867	Enhancers Flanking Active TSS Weak transcription Strong transcription Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:175460400-175465600	Weak transcription	Liver	Liver
2	chr4:175461000-175462200	Weak transcription	GM12878-XiMat	blood
3	chr4:175461400-175474200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
4	chr4:175461600-175463200	Weak transcription	Placenta	Placenta

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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