Variant report

Variant	rs56282135
Chromosome Location	chr10:43833415-43833416
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr10:43833104-43833461	H1-hESC	embryonic stem cell:	n/a	n/a

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:43832614..43835578-chr10:43888340..43890232,2	MCF-7	breast:
2	chr10:43832495..43835214-chr10:43835530..43838072,2	MCF-7	breast:

Variant related genes	Relation type
RNU6ATAC11P	TF binding region
ENSG00000221468	Chromatin interaction

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs11238518	0.85[AFR][1000 genomes]
rs11238519	0.80[AFR][1000 genomes]
rs12356258	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs67284218	0.94[AFR][1000 genomes];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs7079012	0.80[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv430159	chr10:43291894-43946294	Flanking Active TSS Enhancers Active TSS Strong transcription Weak transcription ZNF genes & repeats Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	92 gene(s)	inside rSNPs	diseases
2	nsv916378	chr10:43622151-43868356	Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
3	nsv1043661	chr10:43626619-43890162	Bivalent Enhancer Active TSS Enhancers Weak transcription Bivalent/Poised TSS Flanking Active TSS Genic enhancers Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	17 gene(s)	inside rSNPs	diseases
4	nsv540574	chr10:43626619-43890162	Enhancers Bivalent Enhancer Flanking Active TSS Active TSS Weak transcription Genic enhancers Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	17 gene(s)	inside rSNPs	diseases
5	nsv1035873	chr10:43721143-43873664	Flanking Active TSS Enhancers Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Weak transcription Genic enhancers Active TSS Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
6	nsv466882	chr10:43721481-43849358	Enhancers Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Weak transcription Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
7	nsv550697	chr10:43721481-43849358	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
8	nsv1044422	chr10:43731521-43860307	Bivalent/Poised TSS Flanking Active TSS Enhancers Weak transcription Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
9	nsv895087	chr10:43783339-43982390	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	73 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:26 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:43828800-43839600	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
2	chr10:43828800-43839800	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
3	chr10:43829000-43834200	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
4	chr10:43829600-43833600	Weak transcription	Lung	lung
5	chr10:43832200-43834000	Enhancers	HUES48 Cell Line	embryonic stem cell
6	chr10:43832200-43834000	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
7	chr10:43832600-43833600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
8	chr10:43832600-43833600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
9	chr10:43832600-43833600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
10	chr10:43832600-43833600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
11	chr10:43832600-43833600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
12	chr10:43832600-43833600	Weak transcription	Fetal Intestine Large	intestine
13	chr10:43832600-43833600	Weak transcription	Pancreas	Pancrea
14	chr10:43832600-43833600	Weak transcription	Spleen	Spleen
15	chr10:43832600-43833600	Enhancers	A549	lung
16	chr10:43832600-43833800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
17	chr10:43832600-43833800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
18	chr10:43832800-43833600	Enhancers	HUES6 Cell Line	embryonic stem cell
19	chr10:43832800-43833600	Weak transcription	Fetal Intestine Small	intestine
20	chr10:43833200-43834000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
21	chr10:43833400-43833800	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
22	chr10:43833400-43833800	Enhancers	iPS-18 Cell Line	embryonic stem cell
23	chr10:43833400-43834400	Enhancers	iPS-15b Cell Line	embryonic stem cell
24	chr10:43833400-43834600	Enhancers	ES-I3 Cell Line	embryonic stem cell
25	chr10:43833400-43835200	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
26	chr10:43833400-43836800	Enhancers	Placenta	Placenta

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