Variant report

Variant	rs562821575
Chromosome Location	chr2:173938510-173938511
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 3 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1011724	chr2:173916482-174231908	Enhancers Flanking Bivalent TSS/Enh Strong transcription Flanking Active TSS Weak transcription Bivalent Enhancer Active TSS Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
2	nsv834460	chr2:173919464-174085288	Strong transcription Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
3	esv3371931	chr2:173938506-173943004	Enhancers Flanking Active TSS Active TSS Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:173934000-173940000	Weak transcription	Pancreas	Pancrea
2	chr2:173935600-173939800	Weak transcription	Fetal Lung	lung
3	chr2:173936000-173940000	Weak transcription	Right Atrium	heart
4	chr2:173937200-173939600	Enhancers	Skeletal Muscle Male	skeletal muscle
5	chr2:173937600-173938600	Enhancers	Stomach Smooth Muscle	stomach
6	chr2:173937800-173940000	Weak transcription	Aorta	Aorta
7	chr2:173938000-173938600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
8	chr2:173938000-173938600	Weak transcription	Psoas Muscle	Psoas
9	chr2:173938200-173938600	Flanking Active TSS	Skeletal Muscle Female	skeletal muscle
10	chr2:173938400-173938800	Flanking Active TSS	Fetal Heart	heart
11	chr2:173938400-173940000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links