Variant report

Variant	rs56286820
Chromosome Location	chr11:76210376-76210377
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:76154636..76157268-chr11:76209424..76211012,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000255135	Chromatin interaction
ENSG00000158636	Chromatin interaction

Extended variants
information (count: 4 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs11236746	0.82[EUR][1000 genomes]
rs35836875	0.92[AMR][1000 genomes];0.99[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1050713	chr11:76147085-76267117	Transcr. at gene 5' and 3' Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats Enhancers Active TSS Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	45 gene(s)	inside rSNPs	diseases
2	esv3383733	chr11:76186353-76225544	Strong transcription Weak transcription ZNF genes & repeats Enhancers Genic enhancers Flanking Active TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:118 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:76166800-76219400	Weak transcription	Small Intestine	intestine
2	chr11:76168800-76234800	Weak transcription	Psoas Muscle	Psoas
3	chr11:76171200-76221200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
4	chr11:76184400-76235000	Weak transcription	NHEK	skin
5	chr11:76189000-76231400	Weak transcription	Muscle Satellite Cultured Cells	--
6	chr11:76189200-76211600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
7	chr11:76189400-76223000	Weak transcription	HUVEC	blood vessel
8	chr11:76190800-76234200	Weak transcription	Left Ventricle	heart
9	chr11:76191400-76211200	Weak transcription	NH-A	brain
10	chr11:76191400-76211400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
11	chr11:76191400-76211400	Weak transcription	Fetal Kidney	kidney
12	chr11:76191400-76211400	Weak transcription	HMEC	breast
13	chr11:76191400-76211600	Weak transcription	Fetal Heart	heart
14	chr11:76191400-76221200	Weak transcription	H9 Cell Line	embryonic stem cell
15	chr11:76191400-76239000	Weak transcription	Colon Smooth Muscle	Colon
16	chr11:76191600-76231600	Weak transcription	NHDF-Ad	bronchial
17	chr11:76192800-76221200	Weak transcription	H1 Cell Line	embryonic stem cell
18	chr11:76192800-76242800	Weak transcription	Rectal Smooth Muscle	rectum
19	chr11:76199000-76210600	Weak transcription	GM12878-XiMat	blood
20	chr11:76201400-76212800	Strong transcription	Primary T helper cells fromperipheralblood	blood
21	chr11:76203200-76211400	Weak transcription	K562	blood
22	chr11:76204000-76221200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
23	chr11:76205200-76211400	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
24	chr11:76205200-76211400	Weak transcription	A549	lung
25	chr11:76205200-76211600	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
26	chr11:76205200-76213000	Weak transcription	Skeletal Muscle Male	skeletal muscle
27	chr11:76205200-76234200	Weak transcription	Sigmoid Colon	Sigmoid Colon
28	chr11:76205200-76235800	Weak transcription	NHLF	lung
29	chr11:76205200-76254400	Weak transcription	Aorta	Aorta
30	chr11:76205400-76210800	Weak transcription	Fetal Muscle Leg	muscle
31	chr11:76205400-76210800	Weak transcription	Fetal Stomach	stomach
32	chr11:76205400-76210800	Weak transcription	Spleen	Spleen
33	chr11:76205400-76211400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
34	chr11:76205400-76211800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
35	chr11:76205400-76221200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
36	chr11:76205400-76227000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
37	chr11:76205400-76235800	Weak transcription	Lung	lung
38	chr11:76205400-76240000	Weak transcription	Placenta Amnion	Placenta Amnion
39	chr11:76205400-76254600	Weak transcription	Right Ventricle	heart
40	chr11:76205400-76255200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
41	chr11:76205600-76211600	Weak transcription	HSMMtube	muscle
42	chr11:76205600-76221200	Weak transcription	Pancreas	Pancrea
43	chr11:76205600-76239200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
44	chr11:76205800-76211400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
45	chr11:76205800-76211400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
46	chr11:76205800-76211400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
47	chr11:76205800-76211400	Weak transcription	Adipose Nuclei	Adipose
48	chr11:76205800-76221200	Weak transcription	Ovary	ovary
49	chr11:76205800-76235800	Weak transcription	Esophagus	oesophagus
50	chr11:76206000-76249200	Weak transcription	Colonic Mucosa	Colon

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