Variant report

Variant	rs56289879
Chromosome Location	chr4:125816727-125816728
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 51 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:44)

rs_ID	r²[population]
rs10015272	1.00[ASN][1000 genomes]
rs10018662	1.00[ASN][1000 genomes]
rs10021315	1.00[ASN][1000 genomes]
rs10021730	1.00[ASN][1000 genomes]
rs10023306	1.00[ASN][1000 genomes]
rs10027151	1.00[ASN][1000 genomes]
rs10027239	1.00[ASN][1000 genomes]
rs10470923	1.00[ASN][1000 genomes]
rs10471028	1.00[ASN][1000 genomes]
rs10518456	1.00[ASN][1000 genomes]
rs11934035	1.00[ASN][1000 genomes]
rs12498985	1.00[AFR][1000 genomes]
rs12499252	1.00[AFR][1000 genomes]
rs12499593	1.00[AFR][1000 genomes]
rs12500237	1.00[AFR][1000 genomes]
rs12500339	1.00[AFR][1000 genomes]
rs12501606	1.00[AFR][1000 genomes]
rs12506963	1.00[AFR][1000 genomes]
rs12508712	1.00[AFR][1000 genomes]
rs12508853	1.00[AFR][1000 genomes]
rs12512668	1.00[AFR][1000 genomes]
rs13435791	1.00[ASN][1000 genomes]
rs17008497	1.00[AFR][1000 genomes]
rs17008941	1.00[AFR][1000 genomes]
rs17009072	1.00[AFR][1000 genomes]
rs17009089	1.00[AFR][1000 genomes]
rs17009136	1.00[AFR][1000 genomes]
rs28360920	1.00[ASN][1000 genomes]
rs28412826	1.00[ASN][1000 genomes]
rs28445590	1.00[ASN][1000 genomes]
rs28474678	1.00[ASN][1000 genomes]
rs28527224	1.00[ASN][1000 genomes]
rs28573965	1.00[ASN][1000 genomes]
rs28696122	1.00[ASN][1000 genomes]
rs28839783	1.00[ASN][1000 genomes]
rs35278497	1.00[AFR][1000 genomes]
rs57031928	1.00[ASN][1000 genomes]
rs72683899	1.00[ASN][1000 genomes]
rs7356274	1.00[ASN][1000 genomes]
rs7356470	1.00[ASN][1000 genomes]
rs9307553	1.00[ASN][1000 genomes]
rs9307555	1.00[ASN][1000 genomes]
rs9991412	1.00[ASN][1000 genomes]
rs9993953	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1011752	chr4:125708756-125932456	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription Genic enhancers	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
2	nsv1001338	chr4:125708756-126103293	Weak transcription Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Active TSS	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
3	nsv830050	chr4:125717858-125888563	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Strong transcription Genic enhancers	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
4	nsv879884	chr4:125791252-125841892	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Genic enhancers Strong transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
5	nsv879885	chr4:125791252-125852874	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Genic enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
6	nsv879886	chr4:125791252-125856465	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Genic enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
7	nsv470069	chr4:125807868-125850998	Weak transcription Enhancers Strong transcription Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:125798200-125820800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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