Variant report

Variant	rs562907516
Chromosome Location	chr7:104634963-104634964
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 7 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1029283	chr7:104571741-104729168	Strong transcription Flanking Active TSS Enhancers Weak transcription Transcr. at gene 5' and 3' Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	132 gene(s)	inside rSNPs	diseases
2	nsv888927	chr7:104614664-104781644	Enhancers Weak transcription Genic enhancers Flanking Active TSS Strong transcription Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	132 gene(s)	inside rSNPs	diseases
3	esv2829879	chr7:104618318-104652671	Transcr. at gene 5' and 3' Active TSS Weak transcription Strong transcription Flanking Active TSS Enhancers Genic enhancers ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	29 gene(s)	inside rSNPs	diseases
4	nsv608068	chr7:104622402-104757483	Weak transcription Enhancers Genic enhancers Strong transcription Transcr. at gene 5' and 3' Flanking Active TSS Active TSS Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	132 gene(s)	inside rSNPs	diseases
5	nsv437561	chr7:104626690-104647571	Enhancers Strong transcription Weak transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Active TSS	Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
6	nsv437995	chr7:104632980-104641241	Genic enhancers Enhancers Weak transcription Strong transcription Active TSS Flanking Active TSS	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
7	nsv1022083	chr7:104634376-104644391	Weak transcription Enhancers Active TSS Genic enhancers Flanking Active TSS Strong transcription Transcr. at gene 5' and 3'	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:123 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:104625000-104641200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr7:104625000-104647400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr7:104625200-104643800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
4	chr7:104625400-104643000	Weak transcription	Fetal Brain Female	brain
5	chr7:104625600-104636400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
6	chr7:104625800-104641200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
7	chr7:104626200-104636200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
8	chr7:104626200-104641600	Weak transcription	Brain Germinal Matrix	brain
9	chr7:104626400-104639600	Weak transcription	Primary neutrophils fromperipheralblood	blood
10	chr7:104627000-104641000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
11	chr7:104627200-104638400	Weak transcription	Brain Inferior Temporal Lobe	brain
12	chr7:104627400-104643600	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
13	chr7:104627800-104637600	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
14	chr7:104628600-104636400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
15	chr7:104629800-104640200	Weak transcription	Cortex derived primary cultured neurospheres	brain
16	chr7:104629800-104641200	Weak transcription	Colonic Mucosa	Colon
17	chr7:104630000-104637800	Strong transcription	Dnd41	blood
18	chr7:104630200-104641200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
19	chr7:104630800-104635400	Strong transcription	Muscle Satellite Cultured Cells	--
20	chr7:104630800-104639000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
21	chr7:104630800-104640200	Weak transcription	Placenta Amnion	Placenta Amnion
22	chr7:104630800-104641600	Weak transcription	Brain Cingulate Gyrus	brain
23	chr7:104630800-104643600	Weak transcription	Fetal Kidney	kidney
24	chr7:104631000-104636400	Weak transcription	Pancreatic Islets	Pancreatic Islet
25	chr7:104631000-104636800	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
26	chr7:104631200-104636800	Strong transcription	HUES6 Cell Line	embryonic stem cell
27	chr7:104631600-104639000	Strong transcription	K562	blood
28	chr7:104631600-104643600	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
29	chr7:104631800-104635800	Weak transcription	Ovary	ovary
30	chr7:104632000-104636000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
31	chr7:104632000-104637600	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
32	chr7:104632000-104637800	Strong transcription	GM12878-XiMat	blood
33	chr7:104632000-104641200	Weak transcription	Fetal Muscle Trunk	muscle
34	chr7:104632200-104635200	Weak transcription	Liver	Liver
35	chr7:104632200-104635800	Weak transcription	Thymus	Thymus
36	chr7:104632200-104636600	Weak transcription	Fetal Lung	lung
37	chr7:104632200-104640600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
38	chr7:104632200-104641200	Weak transcription	H1 Cell Line	embryonic stem cell
39	chr7:104632200-104641200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
40	chr7:104632200-104641200	Weak transcription	Esophagus	oesophagus
41	chr7:104632200-104641200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
42	chr7:104632200-104641200	Weak transcription	Fetal Muscle Leg	muscle
43	chr7:104632200-104641200	Weak transcription	Gastric	stomach
44	chr7:104632200-104641200	Weak transcription	Pancreas	Pancrea
45	chr7:104632200-104641200	Weak transcription	Spleen	Spleen
46	chr7:104632800-104641200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
47	chr7:104632800-104641200	Weak transcription	Fetal Stomach	stomach
48	chr7:104632800-104641400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
49	chr7:104633000-104635000	Weak transcription	A549	lung
50	chr7:104633000-104636400	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin

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