Variant report

Variant	rs56291673
Chromosome Location	chr11:47031538-47031539
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 5 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs1460827	0.82[AMR][1000 genomes]
rs2903517	0.80[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs4752817	0.81[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1805201	chr11:46971012-47063429	Weak transcription Enhancers Strong transcription Flanking Bivalent TSS/Enh Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Active TSS Bivalent/Poised TSS	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
2	esv1819852	chr11:46971012-47064542	Enhancers Weak transcription ZNF genes & repeats Strong transcription Bivalent Enhancer Flanking Active TSS Genic enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs56291673	FNBP4	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:47003400-47032800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
2	chr11:47026000-47035600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr11:47026600-47036800	Weak transcription	Primary B cells from cord blood	blood
4	chr11:47026600-47042200	Weak transcription	Small Intestine	intestine
5	chr11:47026800-47041000	Weak transcription	Hela-S3	cervix
6	chr11:47026800-47080200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
7	chr11:47027000-47040000	Weak transcription	Cortex derived primary cultured neurospheres	brain
8	chr11:47027200-47031800	Weak transcription	Stomach Smooth Muscle	stomach
9	chr11:47027200-47034600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
10	chr11:47027200-47042000	Weak transcription	Brain Hippocampus Middle	brain
11	chr11:47027400-47039600	Weak transcription	Osteobl	bone
12	chr11:47027400-47056000	Weak transcription	Fetal Intestine Small	intestine
13	chr11:47027800-47048000	Weak transcription	Primary hematopoietic stem cells	blood
14	chr11:47028200-47031600	Weak transcription	Fetal Lung	lung
15	chr11:47031200-47032000	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
16	chr11:47031200-47032400	Enhancers	Colon Smooth Muscle	Colon
17	chr11:47031200-47032800	Enhancers	Rectal Smooth Muscle	rectum
18	chr11:47031400-47031600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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