Variant report

Variant	rs562999571
Chromosome Location	chr6:150948504-150948505
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:150944124..150946424-chr6:150947908..150950533,2	MCF-7	breast:
2	chr6:150947452..150949419-chr6:150952657..150955576,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000224029	Chromatin interaction

Extended variants
information (count: 3 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv886772	chr6:150743364-151024280	Enhancers Active TSS Weak transcription Strong transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv886774	chr6:150931131-150983318	Weak transcription Enhancers Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv522403	chr6:150947524-150950215	Enhancers Weak transcription Flanking Active TSS Genic enhancers ZNF genes & repeats	Chromatin interactive region	1 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:51 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:150928400-150952800	Weak transcription	Right Ventricle	heart
2	chr6:150928600-150948800	Weak transcription	Rectal Smooth Muscle	rectum
3	chr6:150939000-150949600	Weak transcription	Pancreas	Pancrea
4	chr6:150939000-150954200	Weak transcription	Skeletal Muscle Female	skeletal muscle
5	chr6:150939800-150948600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
6	chr6:150940800-150948600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
7	chr6:150941200-150953000	Weak transcription	Cortex derived primary cultured neurospheres	brain
8	chr6:150941800-150954000	Weak transcription	Brain Angular Gyrus	brain
9	chr6:150941800-150962600	Weak transcription	Brain Inferior Temporal Lobe	brain
10	chr6:150942000-150949600	Weak transcription	Colonic Mucosa	Colon
11	chr6:150942000-150949600	Weak transcription	Gastric	stomach
12	chr6:150942200-150948800	Weak transcription	Stomach Mucosa	stomach
13	chr6:150945000-150950000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
14	chr6:150945000-150954200	Weak transcription	Aorta	Aorta
15	chr6:150945600-150950000	Weak transcription	Lung	lung
16	chr6:150947200-150953400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
17	chr6:150947400-150949600	Enhancers	Primary hematopoietic stem cells	blood
18	chr6:150947400-150950400	Enhancers	Fetal Intestine Large	intestine
19	chr6:150947400-150950400	Enhancers	Fetal Kidney	kidney
20	chr6:150947400-150950400	Enhancers	Fetal Lung	lung
21	chr6:150947400-150950400	Enhancers	Fetal Stomach	stomach
22	chr6:150947400-150950400	Enhancers	Rectal Mucosa Donor 31	rectum
23	chr6:150947400-150950400	Enhancers	Sigmoid Colon	Sigmoid Colon
24	chr6:150947600-150949600	Enhancers	Adipose Nuclei	Adipose
25	chr6:150947600-150950400	Enhancers	Rectal Mucosa Donor 29	rectum
26	chr6:150947600-150951800	Enhancers	HepG2	liver
27	chr6:150947600-150952800	Enhancers	Duodenum Mucosa	Duodenum
28	chr6:150947600-150957400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
29	chr6:150947800-150949600	Weak transcription	Left Ventricle	heart
30	chr6:150947800-150950200	Enhancers	Fetal Brain Male	brain
31	chr6:150947800-150951800	Weak transcription	Placenta	Placenta
32	chr6:150947800-150959400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
33	chr6:150948000-150949000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
34	chr6:150948000-150949200	Enhancers	Primary hematopoietic stem cells short term culture	blood
35	chr6:150948000-150949400	Enhancers	Liver	Liver
36	chr6:150948000-150949600	Weak transcription	Right Atrium	heart
37	chr6:150948000-150949600	Weak transcription	Spleen	Spleen
38	chr6:150948000-150950000	Enhancers	HUVEC	blood vessel
39	chr6:150948000-150953800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
40	chr6:150948200-150948600	Weak transcription	Duodenum Smooth Muscle	Duodenum
41	chr6:150948200-150948600	Weak transcription	Fetal Intestine Small	intestine
42	chr6:150948200-150949000	Weak transcription	Fetal Muscle Leg	muscle
43	chr6:150948200-150949000	Weak transcription	Small Intestine	intestine
44	chr6:150948200-150949600	Enhancers	Primary B cells from peripheral blood	blood
45	chr6:150948200-150950000	Enhancers	Fetal Thymus	thymus
46	chr6:150948200-150950000	Enhancers	Thymus	Thymus
47	chr6:150948200-150952400	Weak transcription	Fetal Muscle Trunk	muscle
48	chr6:150948400-150948800	Weak transcription	Fetal Heart	heart
49	chr6:150948400-150949200	Flanking Active TSS	Primary B cells from cord blood	blood
50	chr6:150948400-150949400	Enhancers	Primary T cells from cord blood	blood

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