Variant report

Variant	rs563035962
Chromosome Location	chr15:77091901-77091902
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:11 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv542439	chr15:76762161-77196336	Enhancers Weak transcription Strong transcription ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	9 gene(s)	inside rSNPs	diseases
2	esv3440794	chr15:76764595-77571114	Weak transcription Enhancers Strong transcription Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
3	esv2830013	chr15:76863023-77176158	Weak transcription ZNF genes & repeats Strong transcription Enhancers Flanking Active TSS Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	4 gene(s)	inside rSNPs	diseases
4	nsv904407	chr15:76869929-77121196	Weak transcription Strong transcription Active TSS ZNF genes & repeats Enhancers Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	4 gene(s)	inside rSNPs	diseases
5	nsv1046137	chr15:76892097-77196336	ZNF genes & repeats Strong transcription Weak transcription Enhancers Flanking Active TSS Genic enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
6	nsv542442	chr15:76892097-77196336	ZNF genes & repeats Strong transcription Weak transcription Enhancers Genic enhancers Flanking Active TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
7	nsv457206	chr15:76971456-77121196	Strong transcription Weak transcription ZNF genes & repeats Active TSS Enhancers Genic enhancers Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
8	nsv570110	chr15:76971456-77121196	Weak transcription Strong transcription ZNF genes & repeats Enhancers Genic enhancers Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
9	esv3367577	chr15:77015618-77442634	Genic enhancers Weak transcription Strong transcription Enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
10	esv3356461	chr15:77091866-77092490	Strong transcription Weak transcription Enhancers Genic enhancers	TF binding region	1 gene(s)	inside rSNPs	diseases
11	esv3410900	chr15:77091876-77092489	Weak transcription Strong transcription Enhancers Genic enhancers	TF binding region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:102 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:77057000-77092000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
2	chr15:77057000-77097200	Weak transcription	Muscle Satellite Cultured Cells	--
3	chr15:77057200-77098400	Weak transcription	Brain Cingulate Gyrus	brain
4	chr15:77057800-77098200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
5	chr15:77058000-77100200	Weak transcription	Fetal Brain Male	brain
6	chr15:77058000-77106000	Weak transcription	Skeletal Muscle Male	skeletal muscle
7	chr15:77070000-77093600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
8	chr15:77070000-77097200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
9	chr15:77073000-77093800	Weak transcription	Gastric	stomach
10	chr15:77073000-77101000	Weak transcription	Lung	lung
11	chr15:77073000-77101400	Weak transcription	Right Ventricle	heart
12	chr15:77073000-77109200	Weak transcription	Spleen	Spleen
13	chr15:77073000-77125000	Weak transcription	Pancreas	Pancrea
14	chr15:77075800-77092000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
15	chr15:77076600-77098000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
16	chr15:77078200-77103000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
17	chr15:77079600-77097800	Weak transcription	HSMMtube	muscle
18	chr15:77080400-77092000	Weak transcription	HMEC	breast
19	chr15:77082600-77096400	Weak transcription	Colonic Mucosa	Colon
20	chr15:77083600-77097600	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
21	chr15:77083800-77092000	Weak transcription	Brain Hippocampus Middle	brain
22	chr15:77083800-77095000	Weak transcription	Brain Anterior Caudate	brain
23	chr15:77083800-77095600	Weak transcription	Fetal Lung	lung
24	chr15:77083800-77097800	Weak transcription	Pancreatic Islets	Pancreatic Islet
25	chr15:77083800-77098000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
26	chr15:77084000-77100400	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
27	chr15:77084000-77100600	Weak transcription	GM12878-XiMat	blood
28	chr15:77084000-77100800	Weak transcription	Sigmoid Colon	Sigmoid Colon
29	chr15:77084400-77098000	Weak transcription	Small Intestine	intestine
30	chr15:77084800-77092600	Weak transcription	HepG2	liver
31	chr15:77084800-77098200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
32	chr15:77085200-77097200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
33	chr15:77085200-77098400	Weak transcription	Rectal Mucosa Donor 31	rectum
34	chr15:77085400-77092000	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
35	chr15:77085400-77096600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
36	chr15:77085400-77125000	Weak transcription	HSMM	muscle
37	chr15:77085600-77094200	Weak transcription	Rectal Smooth Muscle	rectum
38	chr15:77085800-77104400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
39	chr15:77086200-77097600	Weak transcription	Hela-S3	cervix
40	chr15:77086200-77097800	Weak transcription	Colon Smooth Muscle	Colon
41	chr15:77086400-77092000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
42	chr15:77086400-77092000	Weak transcription	Fetal Brain Female	brain
43	chr15:77086400-77097800	Weak transcription	Brain Germinal Matrix	brain
44	chr15:77086400-77098400	Weak transcription	Brain Substantia Nigra	brain
45	chr15:77086400-77100600	Weak transcription	Aorta	Aorta
46	chr15:77086400-77101600	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
47	chr15:77086400-77111000	Weak transcription	Thymus	Thymus
48	chr15:77086600-77092000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
49	chr15:77086600-77094600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
50	chr15:77086600-77094800	Weak transcription	Brain Angular Gyrus	brain

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