Variant report

Variant	rs563258258
Chromosome Location	chr10:43917309-43917310
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	GATA1	chr10:43915337-43917500	PBDE	blood:	n/a	chr10:43916640-43916661 chr10:43916647-43916657 chr10:43916645-43916655 chr10:43916642-43916658 chr10:43916645-43916654 chr10:43916647-43916654
2	ARID3A	chr10:43915874-43917818	HepG2	liver:	n/a	n/a
3	POLR2A	chr10:43917295-43917508	HepG2	liver:	n/a	n/a
4	POLR2A	chr10:43917119-43917582	HepG2	liver:	n/a	n/a
5	HEY1	chr10:43917212-43917710	HepG2	liver:	n/a	n/a
6	FOS	chr10:43917028-43917804	MCF10A-Er-Src	breast:	n/a	chr10:43917590-43917599 chr10:43917591-43917598 chr10:43917591-43917600 chr10:43917591-43917599
7	FOS	chr10:43917023-43917804	MCF10A-Er-Src	breast:	n/a	chr10:43917590-43917599 chr10:43917591-43917598 chr10:43917591-43917600 chr10:43917591-43917599
8	FOSL2	chr10:43917296-43917818	HepG2	liver:	n/a	chr10:43917590-43917601 chr10:43917590-43917599 chr10:43917591-43917598 chr10:43917591-43917600 chr10:43917591-43917599
9	FOSL2	chr10:43917281-43917893	HepG2	liver:	n/a	chr10:43917590-43917601 chr10:43917590-43917599 chr10:43917591-43917598 chr10:43917591-43917600 chr10:43917591-43917599
10	FOS	chr10:43916937-43917821	MCF10A-Er-Src	breast:	n/a	chr10:43917590-43917599 chr10:43917591-43917598 chr10:43917591-43917600 chr10:43917591-43917599

No.	Distal block	Cell Line	Cell type
1	chr10:43914713..43918981-chr10:43928825..43933676,11	MCF-7	breast:
2	chr10:43915403..43918859-chr10:43929644..43933431,7	K562	blood:
3	chr10:43913716..43915348-chr10:43917079..43919877,2	K562	blood:

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-ZNF487P-1	chr10:43917118-43917548	ENSG00000230555.2

Variant related genes	Relation type
ENSG00000221400	TF binding region
ENSG00000243660	Chromatin interaction

Extended variants
information (count: 8 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv430159	chr10:43291894-43946294	Flanking Active TSS Enhancers Active TSS Strong transcription Weak transcription ZNF genes & repeats Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	92 gene(s)	inside rSNPs	diseases
2	nsv895087	chr10:43783339-43982390	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	73 gene(s)	inside rSNPs	diseases
3	nsv831842	chr10:43846541-43987501	Strong transcription Flanking Active TSS Active TSS Weak transcription Enhancers Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	69 gene(s)	inside rSNPs	diseases
4	nsv895088	chr10:43871999-44003101	Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	67 gene(s)	inside rSNPs	diseases
5	nsv825354	chr10:43883418-43949936	Flanking Active TSS Active TSS Enhancers Genic enhancers Weak transcription Transcr. at gene 5' and 3' Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	66 gene(s)	inside rSNPs	diseases
6	nsv825355	chr10:43890579-43923802	Weak transcription Active TSS Flanking Active TSS Enhancers Genic enhancers Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	55 gene(s)	inside rSNPs	diseases
7	nsv825356	chr10:43893080-43946515	Flanking Active TSS Active TSS Enhancers Weak transcription Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	63 gene(s)	inside rSNPs	diseases
8	esv3401722	chr10:43917246-43919794	Weak transcription Enhancers Flanking Active TSS	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:70 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:43915800-43917400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr10:43916400-43917400	Flanking Active TSS	HepG2	liver
3	chr10:43916600-43917800	Enhancers	Stomach Mucosa	stomach
4	chr10:43916800-43917400	Enhancers	Primary B cells from cord blood	blood
5	chr10:43916800-43917400	Enhancers	Primary B cells from peripheral blood	blood
6	chr10:43916800-43917400	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
7	chr10:43916800-43917400	Enhancers	Liver	Liver
8	chr10:43916800-43917400	Enhancers	Brain Angular Gyrus	brain
9	chr10:43916800-43917400	Enhancers	Brain Hippocampus Middle	brain
10	chr10:43916800-43917400	Enhancers	Brain Substantia Nigra	brain
11	chr10:43916800-43917400	Enhancers	Duodenum Smooth Muscle	Duodenum
12	chr10:43916800-43917400	Enhancers	Fetal Muscle Trunk	muscle
13	chr10:43916800-43917400	Enhancers	Skeletal Muscle Female	skeletal muscle
14	chr10:43916800-43917400	Enhancers	NHDF-Ad	bronchial
15	chr10:43916800-43917600	Enhancers	Primary neutrophils fromperipheralblood	blood
16	chr10:43916800-43917600	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
17	chr10:43916800-43917600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
18	chr10:43916800-43917600	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
19	chr10:43916800-43917600	Enhancers	Colon Smooth Muscle	Colon
20	chr10:43916800-43917600	Enhancers	Fetal Muscle Leg	muscle
21	chr10:43916800-43917600	Enhancers	Right Ventricle	heart
22	chr10:43916800-43917800	Enhancers	Primary hematopoietic stem cells short term culture	blood
23	chr10:43916800-43918000	Enhancers	Fetal Intestine Large	intestine
24	chr10:43916800-43918000	Enhancers	Fetal Intestine Small	intestine
25	chr10:43916800-43918000	Enhancers	Small Intestine	intestine
26	chr10:43916800-43919800	Weak transcription	Fetal Lung	lung
27	chr10:43916800-43920000	Enhancers	Fetal Adrenal Gland	Adrenal Gland
28	chr10:43916800-43921200	Weak transcription	Primary T cells from cord blood	blood
29	chr10:43916800-43922400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
30	chr10:43916800-43931400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
31	chr10:43916800-43931600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
32	chr10:43916800-43931600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
33	chr10:43917000-43917400	Enhancers	Primary monocytes fromperipheralblood	blood
34	chr10:43917000-43917400	Enhancers	Primary T cells fromperipheralblood	blood
35	chr10:43917000-43917400	Enhancers	Primary T helper cells fromperipheralblood	blood
36	chr10:43917000-43917400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
37	chr10:43917000-43917400	Enhancers	Muscle Satellite Cultured Cells	--
38	chr10:43917000-43917400	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
39	chr10:43917000-43917400	Enhancers	Brain Cingulate Gyrus	brain
40	chr10:43917000-43917400	Enhancers	Lung	lung
41	chr10:43917000-43917400	Enhancers	Sigmoid Colon	Sigmoid Colon
42	chr10:43917000-43917400	Enhancers	Skeletal Muscle Male	skeletal muscle
43	chr10:43917000-43917800	Enhancers	K562	blood
44	chr10:43917000-43931600	Weak transcription	Fetal Brain Female	brain
45	chr10:43917200-43917400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
46	chr10:43917200-43917400	Enhancers	Primary T helper cells PMA-I stimulated	--
47	chr10:43917200-43917400	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
48	chr10:43917200-43917400	Enhancers	Rectal Mucosa Donor 31	rectum
49	chr10:43917200-43917400	Enhancers	Rectal Smooth Muscle	rectum
50	chr10:43917200-43917400	Enhancers	A549	lung

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