Variant report

Variant	rs56328624
Chromosome Location	chr7:48682435-48682436
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs12538472	0.86[AFR][1000 genomes];0.90[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs17132511	0.86[AFR][1000 genomes];0.90[AMR][1000 genomes];0.90[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs17132514	0.86[AFR][1000 genomes];0.90[AMR][1000 genomes];0.90[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs17132520	0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4517068	0.85[EUR][1000 genomes]
rs58043122	0.94[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs66481137	0.90[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs66727510	0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs67429470	0.90[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs67925221	0.93[AMR][1000 genomes]
rs6948549	0.80[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs6976521	0.86[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7802150	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7807488	0.80[AMR][1000 genomes];0.93[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830992	chr7:48497408-48686442	Weak transcription ZNF genes & repeats Enhancers Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS Strong transcription Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region miRNA target site	1 gene(s)	inside rSNPs	diseases
2	nsv606894	chr7:48663637-48718598	ZNF genes & repeats Weak transcription Strong transcription Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Genic enhancers Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:48672400-48683000	Weak transcription	Fetal Lung	lung
2	chr7:48672600-48688800	Weak transcription	Primary hematopoietic stem cells	blood
3	chr7:48676800-48683200	Weak transcription	Right Atrium	heart
4	chr7:48677600-48682600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
5	chr7:48679200-48683400	Weak transcription	Left Ventricle	heart
6	chr7:48681000-48682600	Enhancers	Fetal Heart	heart
7	chr7:48682000-48682800	Weak transcription	Primary neutrophils fromperipheralblood	blood
8	chr7:48682200-48682600	Enhancers	Fetal Intestine Small	intestine
9	chr7:48682400-48682600	Enhancers	Right Ventricle	heart
10	chr7:48682400-48683400	Enhancers	Fetal Adrenal Gland	Adrenal Gland
11	chr7:48682400-48684000	Enhancers	Fetal Intestine Large	intestine

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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