The 2.0 version of rSNPBase

Variant report

Variant rs563288187
Chromosome Location chr6:101049645-101049646
allele C/T
Outlinks Ensembl   UCSC
Chromatin state (count:98 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr6:101009000-101065600 Weak transcription NHEK skin
2 chr6:101011000-101080800 Weak transcription HepG2 liver
3 chr6:101016400-101065800 Weak transcription Placenta Amnion Placenta Amnion
4 chr6:101017200-101069400 Weak transcription Fetal Lung lung
5 chr6:101017800-101069800 Weak transcription Lung lung
6 chr6:101018400-101051200 Weak transcription Right Ventricle heart
7 chr6:101020400-101066200 Weak transcription Stomach Smooth Muscle stomach
8 chr6:101025800-101099800 Weak transcription Primary T killer memory cells from peripheral blood blood
9 chr6:101027800-101070000 Weak transcription Cortex derived primary cultured neurospheres brain
10 chr6:101028000-101068800 Weak transcription Psoas Muscle Psoas
11 chr6:101030200-101070000 Weak transcription Aorta Aorta
12 chr6:101032400-101102000 Weak transcription Thymus Thymus
13 chr6:101032400-101104400 Weak transcription Skeletal Muscle Male skeletal muscle
14 chr6:101032600-101102000 Weak transcription Brain Hippocampus Middle brain
15 chr6:101032600-101110400 Weak transcription Colon Smooth Muscle Colon
16 chr6:101032800-101065600 Weak transcription Colonic Mucosa Colon
17 chr6:101033600-101057600 Weak transcription Brain Angular Gyrus brain
18 chr6:101033800-101065400 Weak transcription Hela-S3 cervix
19 chr6:101034000-101085000 Weak transcription Ganglion Eminence derived primary cultured neurospheres brain
20 chr6:101034400-101066200 Weak transcription Foreskin Fibroblast Primary Cells skin01 Skin
21 chr6:101034400-101084200 Weak transcription Fetal Muscle Leg muscle
22 chr6:101034400-101092400 Weak transcription Pancreas Pancrea
23 chr6:101034600-101055000 Weak transcription Fetal Intestine Small intestine
24 chr6:101035400-101065600 Weak transcription Foreskin Fibroblast Primary Cells skin02 Skin
25 chr6:101035800-101070000 Weak transcription Primary T helper 17 cells PMA-I stimulated --
26 chr6:101036000-101064600 Weak transcription Fetal Adrenal Gland Adrenal Gland
27 chr6:101036000-101075200 Weak transcription Primary T helper naive cells from peripheral blood blood
28 chr6:101036000-101084800 Weak transcription ES-I3 Cell Line embryonic stem cell
29 chr6:101036200-101053400 Weak transcription ES-UCSF4 Cell Line embryonic stem cell
30 chr6:101036200-101073000 Weak transcription Skeletal Muscle Female skeletal muscle
31 chr6:101036200-101084000 Weak transcription iPS-18 Cell Line embryonic stem cell
32 chr6:101037400-101110600 Weak transcription K562 blood
33 chr6:101037600-101052400 Weak transcription Fetal Intestine Large intestine
34 chr6:101037600-101054000 Weak transcription Primary T helper memory cells from peripheral blood 2 blood
35 chr6:101037600-101056400 Weak transcription hESC Derived CD56+ Ectoderm Cultured Cells ES cell derived
36 chr6:101037600-101057000 Weak transcription ES-WA7 Cell Line embryonic stem cell
37 chr6:101037600-101071200 Weak transcription Primary T helper memory cells from peripheral blood 1 blood
38 chr6:101037600-101072200 Weak transcription Adipose Nuclei Adipose
39 chr6:101037800-101107200 Weak transcription Primary mononuclear cells fromperipheralblood Blood
40 chr6:101038000-101073200 Weak transcription Rectal Mucosa Donor 29 rectum
41 chr6:101038000-101084200 Weak transcription Fetal Thymus thymus
42 chr6:101038600-101065400 Weak transcription Primary T regulatory cells fromperipheralblood blood
43 chr6:101039200-101071200 Weak transcription Primary T killer naive cells fromperipheralblood blood
44 chr6:101041200-101053400 Weak transcription Osteobl bone
45 chr6:101041800-101065600 Weak transcription HSMMtube muscle
46 chr6:101042000-101055200 Strong transcription Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
47 chr6:101042200-101055000 Strong transcription H9 Derived Neuronal Progenitor Cultured Cells ES cell derived
48 chr6:101042400-101055200 Strong transcription Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
49 chr6:101043800-101070200 Weak transcription Spleen Spleen
50 chr6:101044800-101055000 Strong transcription H9 Derived Neuron Cultured Cells ES cell derived

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Last update: Aug 31, 2015