Variant report

Variant	rs563295077
Chromosome Location	chr9:15296187-15296188
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr9:15293831..15297894-chr9:15305171..15308300,4	MCF-7	breast:

Variant related genes	Relation type
ENSG00000155158	Chromatin interaction

Extended variants
information (count: 6 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1031340	chr9:15163004-15332769	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Strong transcription Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	esv2761505	chr9:15274373-15319613	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
3	esv2762797	chr9:15282415-15297028	Flanking Active TSS Enhancers Weak transcription Active TSS Genic enhancers ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3'	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
4	nsv892624	chr9:15283761-15415461	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
5	nsv517975	chr9:15286446-15534070	Weak transcription Genic enhancers Active TSS Flanking Active TSS Enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
6	nsv613650	chr9:15296119-15378449	Enhancers Flanking Active TSS Active TSS Weak transcription Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:115 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:15277600-15296800	Weak transcription	Gastric	stomach
2	chr9:15287400-15303600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
3	chr9:15290800-15305600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
4	chr9:15290800-15306000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
5	chr9:15291200-15305600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
6	chr9:15292200-15296800	Weak transcription	HUES48 Cell Line	embryonic stem cell
7	chr9:15293400-15296400	Enhancers	Fetal Intestine Large	intestine
8	chr9:15294200-15296600	Enhancers	HUES64 Cell Line	embryonic stem cell
9	chr9:15294400-15306200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
10	chr9:15294600-15297600	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
11	chr9:15294800-15297000	Weak transcription	H9 Cell Line	embryonic stem cell
12	chr9:15294800-15297200	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
13	chr9:15294800-15297600	Enhancers	Lung	lung
14	chr9:15295000-15296800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
15	chr9:15295000-15297000	Weak transcription	H1 Cell Line	embryonic stem cell
16	chr9:15295200-15296200	Flanking Active TSS	Primary T killer memory cells from peripheral blood	blood
17	chr9:15295200-15297800	Flanking Active TSS	Primary T helper cells PMA-I stimulated	--
18	chr9:15295400-15296800	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
19	chr9:15295400-15297200	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
20	chr9:15295400-15297200	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
21	chr9:15295400-15297200	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
22	chr9:15295400-15297400	Genic enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
23	chr9:15295600-15296200	Flanking Active TSS	Primary T cells effector/memory enriched fromperipheralblood	blood
24	chr9:15295600-15296200	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
25	chr9:15295600-15296200	Flanking Active TSS	Liver	Liver
26	chr9:15295600-15296200	Flanking Active TSS	Stomach Smooth Muscle	stomach
27	chr9:15295600-15296200	Flanking Active TSS	HUVEC	blood vessel
28	chr9:15295600-15296200	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
29	chr9:15295600-15296600	Flanking Active TSS	Primary T helper memory cells from peripheral blood 2	blood
30	chr9:15295600-15296600	Flanking Active TSS	GM12878-XiMat	blood
31	chr9:15295600-15297400	Flanking Active TSS	Primary T cells from cord blood	blood
32	chr9:15295800-15296200	Flanking Active TSS	IMR90 fetal lung fibroblasts Cell Line	lung
33	chr9:15295800-15296200	Flanking Active TSS	Primary T helper naive cells from peripheral blood	blood
34	chr9:15295800-15296200	Flanking Active TSS	Foreskin Fibroblast Primary Cells skin02	Skin
35	chr9:15295800-15296200	Flanking Active TSS	Adipose Nuclei	Adipose
36	chr9:15295800-15296200	Flanking Active TSS	Brain Hippocampus Middle	brain
37	chr9:15295800-15296200	Flanking Active TSS	Brain Inferior Temporal Lobe	brain
38	chr9:15295800-15296200	Flanking Active TSS	Duodenum Mucosa	Duodenum
39	chr9:15295800-15296200	Active TSS	Fetal Brain Male	brain
40	chr9:15295800-15296200	Flanking Active TSS	Rectal Mucosa Donor 29	rectum
41	chr9:15295800-15296200	Flanking Active TSS	Skeletal Muscle Female	skeletal muscle
42	chr9:15295800-15296200	Flanking Active TSS	HMEC	breast
43	chr9:15295800-15296200	Flanking Active TSS	NHEK	skin
44	chr9:15295800-15296400	Enhancers	HUES6 Cell Line	embryonic stem cell
45	chr9:15295800-15296400	Flanking Active TSS	Rectal Mucosa Donor 31	rectum
46	chr9:15295800-15296400	Flanking Active TSS	HepG2	liver
47	chr9:15295800-15296600	Flanking Active TSS	Primary Natural Killer cells fromperipheralblood	blood
48	chr9:15295800-15296600	Flanking Active TSS	Fetal Kidney	kidney
49	chr9:15295800-15296800	Flanking Active TSS	Primary T cells fromperipheralblood	blood
50	chr9:15295800-15296800	Flanking Active TSS	Fetal Thymus	thymus

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