Variant report

Variant	rs56329809
Chromosome Location	chr11:16846065-16846066
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:16843816..16846136-chr11:17097446..17099412,2	K562	blood:

Variant related genes	Relation type
ENSG00000110700	Chromatin interaction

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs56998902	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61617222	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7926392	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7931046	0.90[AFR][1000 genomes]
rs7947562	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832077	chr11:16834545-17059176	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:66 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:16813200-16871400	Weak transcription	Rectal Smooth Muscle	rectum
2	chr11:16823000-16871400	Weak transcription	H9 Cell Line	embryonic stem cell
3	chr11:16833600-16847400	Weak transcription	Aorta	Aorta
4	chr11:16834800-16847400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
5	chr11:16836000-16861600	Weak transcription	Duodenum Smooth Muscle	Duodenum
6	chr11:16837000-16846400	Weak transcription	Brain Inferior Temporal Lobe	brain
7	chr11:16837200-16848600	Weak transcription	Brain Germinal Matrix	brain
8	chr11:16838200-16847400	Weak transcription	Stomach Smooth Muscle	stomach
9	chr11:16838800-16846800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
10	chr11:16839200-16878800	Weak transcription	Thymus	Thymus
11	chr11:16839600-16846400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
12	chr11:16839800-16846200	Weak transcription	Rectal Mucosa Donor 29	rectum
13	chr11:16840000-16847400	Weak transcription	Esophagus	oesophagus
14	chr11:16842400-16846400	Weak transcription	Brain Anterior Caudate	brain
15	chr11:16842400-16846400	Weak transcription	Brain Substantia Nigra	brain
16	chr11:16842400-16846600	Weak transcription	Brain Cingulate Gyrus	brain
17	chr11:16842400-16847400	Weak transcription	Fetal Stomach	stomach
18	chr11:16842400-16848000	Weak transcription	Colonic Mucosa	Colon
19	chr11:16842400-16862200	Weak transcription	Fetal Kidney	kidney
20	chr11:16842600-16846200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
21	chr11:16842600-16846200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
22	chr11:16842600-16846200	Weak transcription	Rectal Mucosa Donor 31	rectum
23	chr11:16842600-16846400	Weak transcription	H1 Cell Line	embryonic stem cell
24	chr11:16842600-16846400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
25	chr11:16842600-16846400	Weak transcription	Brain Hippocampus Middle	brain
26	chr11:16842600-16846400	Weak transcription	Lung	lung
27	chr11:16842600-16846600	Weak transcription	Adipose Nuclei	Adipose
28	chr11:16842600-16846800	Weak transcription	Sigmoid Colon	Sigmoid Colon
29	chr11:16842600-16847400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
30	chr11:16842600-16847400	Weak transcription	Fetal Muscle Trunk	muscle
31	chr11:16842600-16847400	Weak transcription	Fetal Muscle Leg	muscle
32	chr11:16842600-16847400	Weak transcription	Pancreas	Pancrea
33	chr11:16842600-16847400	Weak transcription	Placenta Amnion	Placenta Amnion
34	chr11:16842600-16847600	Weak transcription	Spleen	Spleen
35	chr11:16842600-16852600	Weak transcription	Placenta	Placenta
36	chr11:16842600-16853600	Weak transcription	HUES48 Cell Line	embryonic stem cell
37	chr11:16842600-16854200	Weak transcription	HUES6 Cell Line	embryonic stem cell
38	chr11:16842600-16855000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
39	chr11:16842600-16873400	Weak transcription	Hela-S3	cervix
40	chr11:16842800-16847400	Weak transcription	A549	lung
41	chr11:16842800-16862200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
42	chr11:16843000-16846600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
43	chr11:16843000-16848000	Weak transcription	HSMMtube	muscle
44	chr11:16843000-16874600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
45	chr11:16843200-16848000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
46	chr11:16843600-16846200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
47	chr11:16844000-16846400	Weak transcription	Left Ventricle	heart
48	chr11:16844000-16862000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
49	chr11:16844400-16846200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
50	chr11:16844400-16846400	Weak transcription	Gastric	stomach

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