Variant report

Variant	rs563313427
Chromosome Location	chr3:136364665-136364666
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:136364480..136366014-chr3:136376930..136379520,2	MCF-7	breast:

Extended variants
information (count: 4 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv460861	chr3:136222954-136425600	Weak transcription Enhancers ZNF genes & repeats Strong transcription Flanking Active TSS Active TSS Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	nsv591851	chr3:136222954-136425600	Weak transcription Genic enhancers Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
3	nsv1008866	chr3:136364511-136427790	Weak transcription Enhancers Genic enhancers ZNF genes & repeats Strong transcription Active TSS Flanking Active TSS	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
4	nsv877529	chr3:136364511-136487559	ZNF genes & repeats Flanking Active TSS Weak transcription Enhancers Active TSS Genic enhancers Transcr. at gene 5' and 3' Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	30 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:34 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:136336200-136364800	Weak transcription	Skeletal Muscle Male	skeletal muscle
2	chr3:136347200-136368400	Weak transcription	Fetal Intestine Small	intestine
3	chr3:136347600-136367200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
4	chr3:136348200-136365000	Weak transcription	Primary T cells fromperipheralblood	blood
5	chr3:136348800-136373600	Weak transcription	Thymus	Thymus
6	chr3:136349800-136372400	Weak transcription	Dnd41	blood
7	chr3:136350600-136372200	Weak transcription	Primary T cells from cord blood	blood
8	chr3:136351600-136364800	Weak transcription	Pancreas	Pancrea
9	chr3:136351600-136376200	Weak transcription	Esophagus	oesophagus
10	chr3:136352400-136371600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
11	chr3:136352400-136371600	Weak transcription	Primary T helper cells fromperipheralblood	blood
12	chr3:136352400-136371800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
13	chr3:136357800-136368200	Weak transcription	Lung	lung
14	chr3:136357800-136387400	Weak transcription	Fetal Thymus	thymus
15	chr3:136361400-136366200	Weak transcription	Fetal Stomach	stomach
16	chr3:136362000-136364800	Weak transcription	K562	blood
17	chr3:136363600-136365000	Enhancers	Ovary	ovary
18	chr3:136363600-136365200	Enhancers	Psoas Muscle	Psoas
19	chr3:136363600-136365400	Enhancers	Primary T killer naive cells fromperipheralblood	blood
20	chr3:136364000-136365000	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
21	chr3:136364000-136365000	Enhancers	Small Intestine	intestine
22	chr3:136364000-136366200	Enhancers	Primary T helper cells PMA-I stimulated	--
23	chr3:136364200-136365200	Flanking Active TSS	GM12878-XiMat	blood
24	chr3:136364200-136368000	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
25	chr3:136364400-136364800	Enhancers	Primary T killer memory cells from peripheral blood	blood
26	chr3:136364400-136369400	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
27	chr3:136364600-136364800	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
28	chr3:136364600-136364800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
29	chr3:136364600-136364800	Enhancers	Primary hematopoietic stem cells short term culture	blood
30	chr3:136364600-136365000	Enhancers	Breast Myoepithelial Primary Cells	Breast
31	chr3:136364600-136365000	Enhancers	Gastric	stomach
32	chr3:136364600-136365200	Enhancers	Primary T helper naive cells fromperipheralblood	blood
33	chr3:136364600-136365200	Enhancers	Right Ventricle	heart
34	chr3:136364600-136371800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--

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