Variant report

Variant	rs563339728
Chromosome Location	chr5:177666938-177666939
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr5:177658397..177661582-chr5:177665181..177668920,4	MCF-7	breast:
2	chr5:177664512..177669563-chr5:177672713..177676620,5	K562	blood:
3	chr5:177665861..177669287-chr5:177672890..177677511,4	MCF-7	breast:
4	chr5:177666154..177668382-chr5:177684774..177687012,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000175309	Chromatin interaction

Extended variants
information (count: 29 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:29 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv948342	chr5:177384542-178168737	Flanking Active TSS Enhancers Active TSS Bivalent Enhancer Strong transcription Weak transcription Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	141 gene(s)	inside rSNPs	diseases
2	nsv1029398	chr5:177502106-178070654	Flanking Active TSS Enhancers Weak transcription Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	136 gene(s)	inside rSNPs	diseases
3	nsv1019404	chr5:177507080-177859089	Flanking Active TSS Enhancers Strong transcription Bivalent Enhancer Active TSS Weak transcription Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	126 gene(s)	inside rSNPs	diseases
4	nsv482872	chr5:177580298-177744381	Active TSS Strong transcription Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	106 gene(s)	inside rSNPs	diseases
5	nsv1021981	chr5:177620372-177825272	Transcr. at gene 5' and 3' Flanking Active TSS Enhancers Weak transcription Bivalent Enhancer Genic enhancers Strong transcription Active TSS Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	105 gene(s)	inside rSNPs	diseases
6	nsv537967	chr5:177620372-177825272	Active TSS Strong transcription Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	105 gene(s)	inside rSNPs	diseases
7	nsv1024689	chr5:177638936-177926244	Enhancers Bivalent Enhancer Weak transcription Active TSS Genic enhancers Flanking Active TSS ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases
8	nsv537968	chr5:177638936-177926244	Bivalent Enhancer Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription Genic enhancers ZNF genes & repeats Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases
9	nsv1018031	chr5:177655010-177746378	Weak transcription Active TSS Strong transcription Flanking Active TSS Enhancers Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	10 gene(s)	inside rSNPs	diseases
10	nsv537969	chr5:177655010-177746378	Genic enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Weak transcription Enhancers Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	10 gene(s)	inside rSNPs	diseases
11	nsv883195	chr5:177655194-177690539	Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	7 gene(s)	inside rSNPs	diseases
12	nsv883196	chr5:177655194-177690978	Transcr. at gene 5' and 3' Active TSS Enhancers Strong transcription Flanking Active TSS Genic enhancers Weak transcription Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	7 gene(s)	inside rSNPs	diseases
13	nsv883197	chr5:177655194-177707204	Genic enhancers Enhancers Active TSS Weak transcription Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	9 gene(s)	inside rSNPs	diseases
14	nsv1025291	chr5:177657927-177756215	Enhancers Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' Weak transcription Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	10 gene(s)	inside rSNPs	diseases
15	nsv537970	chr5:177657927-177756215	Enhancers Weak transcription Active TSS Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	10 gene(s)	inside rSNPs	diseases
16	nsv527792	chr5:177659075-177675217	Flanking Active TSS Enhancers Weak transcription Active TSS Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	6 gene(s)	inside rSNPs	diseases
17	nsv883198	chr5:177659075-177690539	Weak transcription Flanking Active TSS Enhancers Strong transcription Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	7 gene(s)	inside rSNPs	diseases
18	nsv883199	chr5:177661902-177717640	Bivalent Enhancer Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	7 gene(s)	inside rSNPs	diseases
19	nsv517167	chr5:177665342-177675217	Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent Enhancer Genic enhancers Strong transcription ZNF genes & repeats	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
20	nsv883200	chr5:177665342-177717640	Flanking Active TSS Bivalent Enhancer Weak transcription Enhancers Active TSS ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS	Chromatin interactive region	7 gene(s)	inside rSNPs	diseases
21	nsv883201	chr5:177665342-177746863	Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Genic enhancers	Chromatin interactive region	7 gene(s)	inside rSNPs	diseases
22	esv1849204	chr5:177666243-177676831	Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Strong transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
23	esv5342	chr5:177666387-177666995	Flanking Active TSS Enhancers Weak transcription Bivalent Enhancer Active TSS Genic enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
24	esv3489580	chr5:177666418-177666998	Weak transcription Flanking Active TSS Enhancers Bivalent Enhancer Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
25	esv3489581	chr5:177666437-177666976	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
26	esv3489583	chr5:177666437-177666976	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
27	esv3489582	chr5:177666448-177667001	Enhancers Flanking Active TSS Weak transcription Active TSS Bivalent Enhancer	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
28	esv3470253	chr5:177666478-177666968	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
29	esv3470254	chr5:177666478-177666968	Enhancers Flanking Active TSS Weak transcription Active TSS Bivalent Enhancer	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:74 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:177660200-177667000	Enhancers	Primary hematopoietic stem cells short term culture	blood
2	chr5:177660200-177667000	Weak transcription	Muscle Satellite Cultured Cells	--
3	chr5:177660200-177667600	Enhancers	Fetal Muscle Trunk	muscle
4	chr5:177660400-177668000	Enhancers	Primary hematopoietic stem cells	blood
5	chr5:177661400-177667800	Enhancers	Adipose Nuclei	Adipose
6	chr5:177661400-177669600	Enhancers	Primary monocytes fromperipheralblood	blood
7	chr5:177661600-177671600	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
8	chr5:177661800-177667600	Enhancers	Liver	Liver
9	chr5:177661800-177669800	Enhancers	Primary T killer naive cells fromperipheralblood	blood
10	chr5:177662200-177674800	Weak transcription	Cortex derived primary cultured neurospheres	brain
11	chr5:177662600-177667600	Weak transcription	Dnd41	blood
12	chr5:177662600-177669600	Weak transcription	Brain Inferior Temporal Lobe	brain
13	chr5:177663200-177667600	Enhancers	Left Ventricle	heart
14	chr5:177663400-177667800	Enhancers	Primary T helper naive cells from peripheral blood	blood
15	chr5:177663400-177668400	Enhancers	Primary T helper cells fromperipheralblood	blood
16	chr5:177663400-177669200	Enhancers	Colonic Mucosa	Colon
17	chr5:177663600-177667200	Enhancers	Sigmoid Colon	Sigmoid Colon
18	chr5:177663600-177667200	Enhancers	HMEC	breast
19	chr5:177663600-177668400	Enhancers	Primary T killer memory cells from peripheral blood	blood
20	chr5:177663600-177669000	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
21	chr5:177663800-177667000	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
22	chr5:177663800-177667600	Enhancers	Fetal Thymus	thymus
23	chr5:177663800-177667800	Enhancers	Primary T helper cells PMA-I stimulated	--
24	chr5:177664000-177667600	Enhancers	Right Ventricle	heart
25	chr5:177664000-177667800	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
26	chr5:177664000-177668600	Enhancers	Primary T helper naive cells fromperipheralblood	blood
27	chr5:177664000-177669800	Enhancers	Placenta	Placenta
28	chr5:177664200-177667600	Enhancers	Primary B cells from peripheral blood	blood
29	chr5:177664200-177668400	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
30	chr5:177664200-177669600	Weak transcription	Brain Cingulate Gyrus	brain
31	chr5:177664200-177669800	Enhancers	Lung	lung
32	chr5:177664400-177668400	Enhancers	Primary T regulatory cells fromperipheralblood	blood
33	chr5:177664600-177668000	Bivalent Enhancer	Fetal Adrenal Gland	Adrenal Gland
34	chr5:177664600-177668400	Weak transcription	Fetal Lung	lung
35	chr5:177665000-177667600	Enhancers	Primary B cells from cord blood	blood
36	chr5:177665200-177669000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
37	chr5:177665600-177667200	Weak transcription	Fetal Stomach	stomach
38	chr5:177665600-177667600	Enhancers	Primary T cells from cord blood	blood
39	chr5:177665800-177667000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
40	chr5:177665800-177667200	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
41	chr5:177666000-177667000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
42	chr5:177666000-177669600	Enhancers	Spleen	Spleen
43	chr5:177666200-177667000	Enhancers	Brain Substantia Nigra	brain
44	chr5:177666200-177667400	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
45	chr5:177666200-177667600	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
46	chr5:177666400-177667200	Weak transcription	Thymus	Thymus
47	chr5:177666400-177667200	Enhancers	Monocytes-CD14+_RO01746	blood
48	chr5:177666400-177667400	Weak transcription	Duodenum Mucosa	Duodenum
49	chr5:177666400-177667400	Weak transcription	Fetal Muscle Leg	muscle
50	chr5:177666400-177667400	Weak transcription	Rectal Mucosa Donor 29	rectum

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