Variant report

Variant	rs563352601
Chromosome Location	chr11:59663162-59663163
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:61)
Chromatin interactive
region (count:1)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:61 , 50 per page) page: 1 2

No.	Chromosome Location	Cell Line	Cell type	Cell Stage
1	chr11:59663124-59663174	BE2_C	brain:	n/a
2	chr11:59663124-59663174	Jurkat	blood:	n/a
3	chr11:59663124-59663174	SK-N-SH_RA	brain:	n/a
4	chr11:59663124-59663174	ProgFib	skin:	n/a
5	chr11:59663124-59663174	IMR90	lung:	fetal
6	chr11:59663124-59663174	AG09309	skin:	n/a
7	chr11:59663124-59663174	SKMC	muscle:	n/a
8	chr11:59663124-59663174	PANC-1	pancreas:	n/a
9	chr11:59663124-59663174	CMK	blood:	n/a
10	chr11:59663124-59663174	NH-A	brain:	n/a
11	chr11:59663124-59663174	AG04450	lung:	fetal
12	chr11:59663124-59663174	GM06990	blood:	n/a
13	chr11:59663124-59663174	Hela-S3	cervix:	n/a
14	chr11:59663124-59663174	AG10803	skin:	n/a
15	chr11:59663124-59663174	HRPEpiC	eye:	n/a
16	chr11:59663124-59663174	U87	brain:	n/a
17	chr11:59663124-59663174	T-47D	breast:	n/a
18	chr11:59663124-59663174	H1-hESC	embryonic stem cell:	embryo
19	chr11:59663124-59663174	HUVEC	blood vessel:	n/a
20	chr11:59663124-59663174	ECC-1	luminal epithelium:	n/a
21	chr11:59663124-59663174	HIPEpiC	eye:	n/a
22	chr11:59663124-59663174	HEEpiC	esophagus:	n/a
23	chr11:59663124-59663174	NHDF-neo	bronchial:	n/a
24	chr11:59663124-59663174	HL-60	blood:	n/a
25	chr11:59663124-59663174	SK-N-MC	brain:	n/a
26	chr11:59663124-59663174	PrEC	prostate:	n/a
27	chr11:59663124-59663174	K562	blood:	n/a
28	chr11:59663124-59663174	AG04449	skin:	fetal
29	chr11:59663124-59663174	GM12891	blood:	n/a
30	chr11:59663124-59663174	NT2-D1	testis:	n/a
31	chr11:59663124-59663174	GM19239	blood:	n/a
32	chr11:59663124-59663174	AoSMC	blood vessel:	n/a
33	chr11:59663124-59663174	HAEpiC	amniotic membrane:	n/a
34	chr11:59663124-59663174	A549	lung:	n/a
35	chr11:59663124-59663174	BJ	skin:	n/a
36	chr11:59663124-59663174	HCT-116	colon:	n/a
37	chr11:59663124-59663174	NB4	blood:	n/a
38	chr11:59663124-59663174	NHBE	bronchial:	n/a
39	chr11:59663124-59663174	HMEC	breast:	n/a
40	chr11:59663124-59663174	SAEC	small airway:	n/a
41	chr11:59663124-59663174	Caco-2	colon:	n/a
42	chr11:59663124-59663174	HRE	kidney:	n/a
43	chr11:59663124-59663174	GM12878	blood:	n/a
44	chr11:59663124-59663174	HRCEpiC	kidney:	n/a
45	chr11:59663124-59663174	HNPCEpiC	eye:	n/a
46	chr11:59663124-59663174	HCF	heart:	n/a
47	chr11:59663124-59663174	ovcar-3	ovarian:	n/a
48	chr11:59663124-59663174	HepG2	liver:	n/a
49	chr11:59663124-59663174	RPTEC	kidney:	n/a
50	chr11:59663124-59663174	Hepatocyte	liver:	n/a

(count:1 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:59661730..59664350-chr11:59667223..59669290,2	K562	blood:

No data

Variant related genes	Relation type
SRD5A3P1	CpG island

Extended variants
information (count: 1 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv975330	chr11:59663142-59666889	Weak transcription Enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:59660000-59666400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr11:59660000-59667000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
3	chr11:59660000-59668800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
4	chr11:59662800-59668200	Weak transcription	NHEK	skin
5	chr11:59662800-59668400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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