The 2.0 version of rSNPBase

Variant report

Variant rs563355845
Chromosome Location chr12:11872597-11872598
allele A/G
Outlinks Ensembl   UCSC
Chromatin state (count:117 , 50 per page) page: 1 2 3
No. Chromosome Location Chromatin state Cell line Tissue
1 chr12:11827400-11879800 Weak transcription Primary T cells effector/memory enriched fromperipheralblood blood
2 chr12:11848800-11879600 Weak transcription Primary mononuclear cells fromperipheralblood Blood
3 chr12:11854800-11872600 Weak transcription iPS DF 6.9 Cell Line embryonic stem cell
4 chr12:11857000-11876800 Genic enhancers Primary hematopoietic stem cells G-CSF-mobilized Male --
5 chr12:11861800-11876200 Weak transcription Skeletal Muscle Male skeletal muscle
6 chr12:11864200-11872600 Weak transcription Psoas Muscle Psoas
7 chr12:11865200-11879400 Weak transcription Primary T helper naive cells fromperipheralblood blood
8 chr12:11865800-11872800 Genic enhancers GM12878-XiMat blood
9 chr12:11865800-11879800 Weak transcription Primary T regulatory cells fromperipheralblood blood
10 chr12:11866800-11873200 Enhancers Liver Liver
11 chr12:11867000-11873200 Genic enhancers Primary hematopoietic stem cells short term culture blood
12 chr12:11867600-11873000 Enhancers Left Ventricle heart
13 chr12:11868400-11872800 Enhancers Fetal Intestine Large intestine
14 chr12:11868400-11873200 Enhancers hESC Derived CD184+ Endoderm Cultured Cells ES cell derived
15 chr12:11868400-11873600 Enhancers Fetal Adrenal Gland Adrenal Gland
16 chr12:11868800-11873400 Enhancers Foreskin Melanocyte Primary Cells skin03 Skin
17 chr12:11869400-11872600 Enhancers NH-A brain
18 chr12:11869400-11873000 Enhancers Cortex derived primary cultured neurospheres brain
19 chr12:11869400-11873200 Enhancers Brain Anterior Caudate brain
20 chr12:11869400-11873200 Enhancers Rectal Mucosa Donor 31 rectum
21 chr12:11869400-11873400 Enhancers Foreskin Fibroblast Primary Cells skin02 Skin
22 chr12:11869400-11873400 Genic enhancers Fetal Thymus thymus
23 chr12:11869400-11873400 Enhancers Sigmoid Colon Sigmoid Colon
24 chr12:11869400-11873600 Enhancers Foreskin Melanocyte Primary Cells skin01 Skin
25 chr12:11869400-11877400 Enhancers HUVEC blood vessel
26 chr12:11869600-11872800 Enhancers Brain Hippocampus Middle brain
27 chr12:11869600-11873000 Enhancers H1 Derived Mesenchymal Stem Cells ES cell derived
28 chr12:11869600-11873000 Enhancers Duodenum Smooth Muscle Duodenum
29 chr12:11869600-11873200 Enhancers Mesenchymal Stem Cell Derived Adipocyte Cultured Cells ES cell derived
30 chr12:11869600-11873200 Enhancers Colon Smooth Muscle Colon
31 chr12:11869600-11873400 Enhancers IMR90 fetal lung fibroblasts Cell Line lung
32 chr12:11869800-11872600 Weak transcription Primary Natural Killer cells fromperipheralblood blood
33 chr12:11869800-11872800 Enhancers Foreskin Keratinocyte Primary Cells skin02 Skin
34 chr12:11869800-11872800 Enhancers Rectal Mucosa Donor 29 rectum
35 chr12:11869800-11873000 Enhancers Muscle Satellite Cultured Cells --
36 chr12:11869800-11873000 Enhancers HMEC breast
37 chr12:11869800-11873200 Enhancers HUES64 Cell Line embryonic stem cell
38 chr12:11869800-11873200 Enhancers Foreskin Keratinocyte Primary Cells skin03 Skin
39 chr12:11869800-11873200 Enhancers Placenta Amnion Placenta Amnion
40 chr12:11869800-11873200 Enhancers NHDF-Ad bronchial
41 chr12:11869800-11873400 Enhancers Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
42 chr12:11869800-11873400 Enhancers Fetal Heart heart
43 chr12:11870000-11873000 Enhancers H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
44 chr12:11870000-11873000 Enhancers Fetal Lung lung
45 chr12:11870200-11872600 Weak transcription Pancreas Pancrea
46 chr12:11870200-11873400 Enhancers Rectal Smooth Muscle rectum
47 chr12:11870200-11885000 Enhancers Breast Myoepithelial Primary Cells Breast
48 chr12:11870400-11873200 Enhancers Primary T helper memory cells from peripheral blood 2 blood
49 chr12:11870400-11873400 Enhancers NHLF lung
50 chr12:11870400-11879600 Weak transcription H9 Derived Neuronal Progenitor Cultured Cells ES cell derived

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Last update: Aug 31, 2015