Variant report
| Variant | rs56336246 |
|---|---|
| Chromosome Location | chr4:120692460-120692461 |
| allele | A/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:32)
| rs_ID | r2[population] |
|---|---|
| rs10016938 | 0.91[ASN][1000 genomes] |
| rs11722660 | 0.91[ASN][1000 genomes] |
| rs11726524 | 0.91[ASN][1000 genomes] |
| rs11730012 | 0.91[ASN][1000 genomes] |
| rs11731926 | 0.91[ASN][1000 genomes] |
| rs11732719 | 0.91[ASN][1000 genomes] |
| rs17005450 | 0.91[ASN][1000 genomes] |
| rs17005667 | 0.91[ASN][1000 genomes] |
| rs17295253 | 0.91[ASN][1000 genomes] |
| rs17296412 | 0.91[ASN][1000 genomes] |
| rs35428685 | 0.91[ASN][1000 genomes] |
| rs3857096 | 0.91[ASN][1000 genomes] |
| rs55685100 | 0.91[ASN][1000 genomes] |
| rs55717715 | 0.91[ASN][1000 genomes] |
| rs55788903 | 1.00[ASN][1000 genomes] |
| rs55929181 | 0.91[ASN][1000 genomes] |
| rs56291824 | 0.91[ASN][1000 genomes] |
| rs56337310 | 0.91[ASN][1000 genomes] |
| rs57160305 | 0.91[ASN][1000 genomes] |
| rs58342688 | 0.91[ASN][1000 genomes] |
| rs59063054 | 0.91[ASN][1000 genomes] |
| rs60849110 | 0.91[ASN][1000 genomes] |
| rs61595361 | 0.90[ASN][1000 genomes] |
| rs61707138 | 0.91[ASN][1000 genomes] |
| rs722808 | 1.00[ASN][1000 genomes] |
| rs72906506 | 0.91[ASN][1000 genomes] |
| rs72906508 | 0.91[ASN][1000 genomes] |
| rs72906511 | 0.91[ASN][1000 genomes] |
| rs72906573 | 1.00[ASN][1000 genomes] |
| rs73842698 | 0.91[ASN][1000 genomes] |
| rs73842716 | 0.87[AMR][1000 genomes];0.91[EUR][1000 genomes];0.91[ASN][1000 genomes] |
| rs9968281 | 0.91[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv916641 | chr4:119780023-120777320 | Strong transcription Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 72 gene(s) | inside rSNPs | diseases |
| 2 | nsv532739 | chr4:120392824-121098103 | Enhancers Flanking Active TSS Strong transcription Weak transcription Bivalent/Poised TSS Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNA | 33 gene(s) | inside rSNPs | diseases |
| 3 | nsv1006572 | chr4:120432494-120694243 | Enhancers Weak transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Strong transcription Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNA | 7 gene(s) | inside rSNPs | diseases |
| 4 | nsv966541 | chr4:120671470-120702965 | Enhancers Weak transcription Bivalent Enhancer Active TSS | Chromatin interactive regionlncRNA | 1 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr4:120690200-120695000 | Weak transcription | Fetal Heart | heart |
