Variant report

Variant	rs56339188
Chromosome Location	chr7:147375126-147375127
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs1525254	0.95[EUR][1000 genomes]
rs17170640	1.00[EUR][1000 genomes]
rs17327726	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs4310124	1.00[EUR][1000 genomes]
rs4383899	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs4455752	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58044035	0.97[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs60448751	1.00[EUR][1000 genomes]
rs731565	0.95[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs73741217	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73741883	0.94[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs7779787	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs7799323	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs851737	0.83[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs971439	1.00[EUR][1000 genomes]
rs971440	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv931005	chr7:146730472-147381257	Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:147374800-147378200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
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chromosomal regions: chr1:12345-34567

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