Variant report

Variant	rs563444663
Chromosome Location	chr6:64201555-64201556
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:9)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

No data

(count:9 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:64144543..64145560-chr6:64200616..64201610,32	MCF-7	breast:
2	chr6:64199123..64202971-chr6:64280505..64284483,5	MCF-7	breast:
3	chr6:64201044..64201648-chr6:64281437..64282326,2	MCF-7	breast:
4	chr6:64200695..64201556-chr6:64254041..64254926,5	MCF-7	breast:
5	chr6:64144526..64145534-chr6:64200616..64201618,23	MCF-7	breast:
6	chr6:64200675..64201588-chr6:64270550..64271368,3	MCF-7	breast:
7	chr6:64185315..64186254-chr6:64201067..64201636,2	MCF-7	breast:
8	chr6:64200695..64201556-chr6:64254041..64254926,2	MCF-7	breast:
9	chr6:64144471..64145931-chr6:64200574..64201618,46	MCF-7	breast:

No data

No data

No data

Extended variants
information (count: 2 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1019831	chr6:63279677-64230736	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
2	nsv970135	chr6:64200126-64215926	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:64197600-64202400	Weak transcription	Stomach Mucosa	stomach
2	chr6:64197600-64202400	Weak transcription	HepG2	liver
3	chr6:64197600-64203400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
4	chr6:64198000-64202200	Weak transcription	Rectal Mucosa Donor 29	rectum
5	chr6:64200800-64201600	Enhancers	A549	lung
6	chr6:64201000-64203800	Enhancers	Fetal Adrenal Gland	Adrenal Gland
7	chr6:64201200-64201800	Weak transcription	Rectal Mucosa Donor 31	rectum
8	chr6:64201400-64202600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
9	chr6:64201400-64202600	Weak transcription	Liver	Liver
10	chr6:64201400-64207200	Enhancers	Hela-S3	cervix

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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