Variant report

Variant	rs56345790
Chromosome Location	chr5:92258871-92258872
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs56055646	1.00[AMR][1000 genomes]
rs58823799	1.00[AMR][1000 genomes]
rs73772023	1.00[AMR][1000 genomes]
rs73772028	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1015770	chr5:91911877-92498264	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
2	nsv830398	chr5:92102826-92281331	Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
3	nsv1022712	chr5:92191693-92415111	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
4	nsv1028930	chr5:92194772-92415111	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
5	nsv823129	chr5:92222972-92280793	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:92257600-92260600	Enhancers	HUES64 Cell Line	embryonic stem cell
2	chr5:92257800-92260400	Enhancers	iPS-18 Cell Line	embryonic stem cell
3	chr5:92258000-92260200	Enhancers	HUES6 Cell Line	embryonic stem cell
4	chr5:92258000-92260800	Enhancers	HUES48 Cell Line	embryonic stem cell
5	chr5:92258000-92261000	Enhancers	iPS-20b Cell Line	embryonic stem cell
6	chr5:92258000-92261200	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
7	chr5:92258000-92261400	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
8	chr5:92258200-92259200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
9	chr5:92258400-92262600	Weak transcription	Brain Inferior Temporal Lobe	brain
10	chr5:92258400-92262800	Weak transcription	Brain Substantia Nigra	brain
11	chr5:92258600-92259600	Weak transcription	H1 Cell Line	embryonic stem cell
12	chr5:92258600-92259600	Weak transcription	H9 Cell Line	embryonic stem cell
13	chr5:92258600-92259600	Weak transcription	HepG2	liver
14	chr5:92258600-92261400	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
15	chr5:92258600-92263000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
16	chr5:92258600-92263000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
17	chr5:92258600-92263000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
18	chr5:92258600-92263200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
19	chr5:92258600-92263200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
20	chr5:92258800-92259200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived

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