Variant report

Variant	rs563467475
Chromosome Location	chr15:76633406-76633407
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:70)
CpG islands
(count:61)
Chromatin interactive
region (count:3)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:70 , 50 per page) page: 1 2

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	YY1	chr15:76633318-76633739	GM12878	blood:	n/a	n/a
2	MAX	chr15:76632466-76635489	H1-hESC	embryonic stem cell:	n/a	chr15:76635415-76635425
3	CTCF	chr15:76633340-76633490	BE2_C	brain:	n/a	n/a
4	RAD21	chr15:76633236-76633743	H1-hESC	embryonic stem cell:	n/a	n/a
5	POLR2A	chr15:76628957-76633759	H1-neurons	neurons:	n/a	n/a
6	CTCF	chr15:76633400-76633550	AG09309	skin:	n/a	n/a
7	CTCF	chr15:76633400-76633550	NHDF-neo	bronchial:	n/a	n/a
8	CTCF	chr15:76633400-76633550	GM12865	blood:	n/a	n/a
9	CTCF	chr15:76633400-76633550	GM12871	blood:	n/a	n/a
10	CTCF	chr15:76633400-76633550	GM12868	blood:	n/a	n/a
11	CTCF	chr15:76633400-76633550	HEEpiC	esophagus:	n/a	n/a
12	ELF1	chr15:76633201-76633748	GM12878	blood:	n/a	n/a
13	CTCF	chr15:76633400-76633550	GM12864	blood:	n/a	n/a
14	CTCF	chr15:76633400-76633550	AG04449	skin:	n/a	n/a
15	CTCF	chr15:76633380-76633530	HCFaa	heart:	n/a	n/a
16	CTCF	chr15:76633353-76633654	GM12892	blood:	n/a	n/a
17	CTCF	chr15:76633380-76633530	HPF	lung:	n/a	n/a
18	CTCF	chr15:76633377-76633658	GM19239	blood:	n/a	n/a
19	E2F6	chr15:76632411-76635905	H1-hESC	embryonic stem cell:	n/a	chr15:76635069-76635076 chr15:76634966-76634975 chr15:76635069-76635076 chr15:76634913-76634922 chr15:76635069-76635076 chr15:76635068-76635077 chr15:76635429-76635439 chr15:76635129-76635143 chr15:76635065-76635077 chr15:76633879-76633888
20	YY1	chr15:76633352-76633613	GM12892	blood:	n/a	n/a
21	POLR2A	chr15:76631377-76633541	H1-neurons	neurons:	n/a	n/a
22	E2F6	chr15:76633333-76635539	H1-hESC	embryonic stem cell:	n/a	chr15:76635069-76635076 chr15:76634966-76634975 chr15:76635069-76635076 chr15:76634913-76634922 chr15:76635069-76635076 chr15:76635068-76635077 chr15:76635429-76635439 chr15:76635129-76635143 chr15:76635065-76635077 chr15:76633879-76633888
23	SUZ12	chr15:76628987-76637136	NT2-D1	testis:	n/a	n/a
24	CTCF	chr15:76633380-76633530	GM12872	blood:	n/a	n/a
25	CTCF	chr15:76633380-76633530	HUVEC	blood vessel:	n/a	n/a
26	EBF1	chr15:76633117-76633749	GM12878	blood:	n/a	n/a
27	CTCF	chr15:76633360-76633510	HCM	heart:	n/a	n/a
28	CTCF	chr15:76633400-76633550	HMF	breast:	n/a	n/a
29	CTCF	chr15:76633380-76633530	HEK293	kidney:	n/a	n/a
30	CTCF	chr15:76633340-76633490	GM12864	blood:	n/a	n/a
31	YY1	chr15:76633287-76633713	GM12892	blood:	n/a	n/a
32	CTCF	chr15:76633380-76633530	HFF-Myc	foreskin:	n/a	n/a
33	CTCF	chr15:76633360-76633510	GM12874	blood:	n/a	n/a
34	CTCF	chr15:76633340-76633490	HFF	foreskin:	n/a	n/a
35	CTCF	chr15:76633380-76633530	HPAF	blood vessel:	n/a	n/a
36	CTCF	chr15:76633400-76633550	HRE	kidney:	n/a	n/a
37	CTCF	chr15:76633360-76633510	GM12878	blood:	n/a	n/a
38	CTCF	chr15:76633403-76633632	GM12891	blood:	n/a	n/a
39	CTCF	chr15:76633360-76633510	HFF-Myc	foreskin:	n/a	n/a
40	CTCF	chr15:76633380-76633530	GM12870	blood:	n/a	n/a
41	CTCF	chr15:76633400-76633550	GM12801	blood:	n/a	n/a
42	CTCF	chr15:76633380-76633530	GM12867	blood:	n/a	n/a
43	CTCF	chr15:76633320-76633470	RPTEC	kidney:	n/a	n/a
44	YY1	chr15:76633289-76633713	GM12878	blood:	n/a	n/a
45	YY1	chr15:76633387-76633664	H1-hESC	embryonic stem cell:	n/a	n/a
46	CTCF	chr15:76633334-76633665	GM12878	blood:	n/a	n/a
47	YY1	chr15:76633374-76633624	GM12891	blood:	n/a	n/a
48	CTCF	chr15:76633400-76633550	AG09319	gingival:	n/a	n/a
49	CTCF	chr15:76633400-76633550	GM12875	blood:	n/a	n/a
50	CTCF	chr15:76633340-76633490	NHEK	skin:	n/a	n/a

(count:61 , 50 per page) page: 1 2

No.	Chromosome Location	Cell Line	Cell type	Cell Stage
1	chr15:76633364-76633414	HPAEpiC	pulmonary alveolar:	n/a
2	chr15:76633364-76633414	SKMC	muscle:	n/a
3	chr15:76633364-76633414	SK-N-SH_RA	brain:	n/a
4	chr15:76633364-76633414	GM19239	blood:	n/a
5	chr15:76633364-76633414	H1-hESC	embryonic stem cell:	embryo
6	chr15:76633364-76633414	Caco-2	colon:	n/a
7	chr15:76633364-76633414	HEK293	kidney:	embryo
8	chr15:76633364-76633414	GM12892	blood:	n/a
9	chr15:76633364-76633414	HepG2	liver:	n/a
10	chr15:76633364-76633414	A549	lung:	n/a
11	chr15:76633364-76633414	HL-60	blood:	n/a
12	chr15:76633364-76633414	AG10803	skin:	n/a
13	chr15:76633364-76633414	K562	blood:	n/a
14	chr15:76633364-76633414	PrEC	prostate:	n/a
15	chr15:76633364-76633414	HCT-116	colon:	n/a
16	chr15:76633364-76633414	RPTEC	kidney:	n/a
17	chr15:76633364-76633414	PANC-1	pancreas:	n/a
18	chr15:76633364-76633414	Jurkat	blood:	n/a
19	chr15:76633364-76633414	HCPEpiC	choroid plexus:	n/a
20	chr15:76633364-76633414	MCF-7	breast:	n/a
21	chr15:76633364-76633414	NHDF-neo	bronchial:	n/a
22	chr15:76633364-76633414	AG04450	lung:	fetal
23	chr15:76633364-76633414	ECC-1	luminal epithelium:	n/a
24	chr15:76633364-76633414	SK-N-SH	brain:	n/a
25	chr15:76633364-76633414	SK-N-MC	brain:	n/a
26	chr15:76633364-76633414	HCM	heart:	n/a
27	chr15:76633364-76633414	HIPEpiC	eye:	n/a
28	chr15:76633364-76633414	AG04449	skin:	fetal
29	chr15:76633364-76633414	MCF10A-Er-Src	breast:	n/a
30	chr15:76633364-76633414	HUVEC	blood vessel:	n/a
31	chr15:76633364-76633414	U87	brain:	n/a
32	chr15:76633364-76633414	HAEpiC	amniotic membrane:	n/a
33	chr15:76633364-76633414	T-47D	breast:	n/a
34	chr15:76633364-76633414	HRPEpiC	eye:	n/a
35	chr15:76633364-76633414	LNCaP	prostate:	n/a
36	chr15:76633364-76633414	GM12891	blood:	n/a
37	chr15:76633364-76633414	GM12878	blood:	n/a
38	chr15:76633364-76633414	AoSMC	blood vessel:	n/a
39	chr15:76633364-76633414	NHBE	bronchial:	n/a
40	chr15:76633364-76633414	HRE	kidney:	n/a
41	chr15:76633364-76633414	HMEC	breast:	n/a
42	chr15:76633364-76633414	HEEpiC	esophagus:	n/a
43	chr15:76633364-76633414	NB4	blood:	n/a
44	chr15:76633364-76633414	ovcar-3	ovarian:	n/a
45	chr15:76633364-76633414	BJ	skin:	n/a
46	chr15:76633364-76633414	HCF	heart:	n/a
47	chr15:76633364-76633414	IMR90	lung:	fetal
48	chr15:76633364-76633414	Hela-S3	cervix:	n/a
49	chr15:76633364-76633414	PFSK-1	brain:	n/a
50	chr15:76633364-76633414	AG09309	skin:	n/a

(count:3 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr15:76601310..76610583-chr15:76618699..76634643,40	K562	blood:
2	chr15:76601574..76614388-chr15:76623703..76634730,38	K562	blood:
3	chr15:76627980..76632315-chr15:76633215..76636196,5	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000270036	TF binding region
ENSG00000270036	CpG island
ENSG00000140374	Chromatin interaction
ENSG00000159556	Chromatin interaction

Extended variants
information (count: 3 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv904399	chr15:76622903-76646575	Bivalent/Poised TSS Flanking Bivalent TSS/Enh Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS Enhancers Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
2	nsv827391	chr15:76626571-76636327	Bivalent/Poised TSS Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Enhancers Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
3	nsv525769	chr15:76632487-76661925	Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS Weak transcription Bivalent Enhancer Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:109 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:76627400-76635400	Bivalent/Poised TSS	ES-I3 Cell Line	embryonic stem cell
2	chr15:76627600-76634400	Bivalent/Poised TSS	Rectal Smooth Muscle	rectum
3	chr15:76629000-76633600	Flanking Bivalent TSS/Enh	Monocytes-CD14+_RO01746	blood
4	chr15:76630200-76641800	Weak transcription	A549	lung
5	chr15:76630400-76636400	Transcr. at gene 5' and 3'	Foreskin Fibroblast Primary Cells skin02	Skin
6	chr15:76630600-76635600	Transcr. at gene 5' and 3'	Foreskin Fibroblast Primary Cells skin01	Skin
7	chr15:76631400-76633600	Flanking Bivalent TSS/Enh	Primary B cells from cord blood	blood
8	chr15:76631600-76633600	Flanking Bivalent TSS/Enh	Rectal Mucosa Donor 29	rectum
9	chr15:76631600-76634800	Bivalent/Poised TSS	iPS-15b Cell Line	embryonic stem cell
10	chr15:76631600-76636400	ZNF genes & repeats	IMR90 fetal lung fibroblasts Cell Line	lung
11	chr15:76631800-76633600	Flanking Bivalent TSS/Enh	Primary T cells from cord blood	blood
12	chr15:76631800-76633600	Flanking Bivalent TSS/Enh	Colonic Mucosa	Colon
13	chr15:76631800-76633600	Flanking Bivalent TSS/Enh	Skeletal Muscle Female	skeletal muscle
14	chr15:76631800-76634400	Bivalent/Poised TSS	HUES64 Cell Line	embryonic stem cell
15	chr15:76631800-76634400	Strong transcription	K562	blood
16	chr15:76631800-76635600	Flanking Bivalent TSS/Enh	Primary T regulatory cells fromperipheralblood	blood
17	chr15:76632000-76633600	Flanking Bivalent TSS/Enh	Primary B cells from peripheral blood	blood
18	chr15:76632000-76633600	Flanking Bivalent TSS/Enh	Muscle Satellite Cultured Cells	--
19	chr15:76632000-76633600	Flanking Bivalent TSS/Enh	Foreskin Keratinocyte Primary Cells skin02	Skin
20	chr15:76632000-76633600	Flanking Bivalent TSS/Enh	Foreskin Melanocyte Primary Cells skin03	Skin
21	chr15:76632000-76633600	Flanking Bivalent TSS/Enh	Brain Substantia Nigra	brain
22	chr15:76632000-76634400	Bivalent/Poised TSS	HUES48 Cell Line	embryonic stem cell
23	chr15:76632000-76634400	Flanking Bivalent TSS/Enh	iPS DF 19.11 Cell Line	embryonic stem cell
24	chr15:76632000-76634400	Flanking Bivalent TSS/Enh	Duodenum Mucosa	Duodenum
25	chr15:76632000-76634400	Flanking Bivalent TSS/Enh	Fetal Intestine Small	intestine
26	chr15:76632000-76634600	Bivalent/Poised TSS	H9 Cell Line	embryonic stem cell
27	chr15:76632000-76634600	Flanking Bivalent TSS/Enh	Skeletal Muscle Male	skeletal muscle
28	chr15:76632200-76633600	Flanking Bivalent TSS/Enh	Primary T cells fromperipheralblood	blood
29	chr15:76632200-76633600	Flanking Bivalent TSS/Enh	Primary hematopoietic stem cells short term culture	blood
30	chr15:76632200-76633600	Flanking Bivalent TSS/Enh	Primary T helper naive cells from peripheral blood	blood
31	chr15:76632200-76633600	Flanking Bivalent TSS/Enh	Primary T helper naive cells fromperipheralblood	blood
32	chr15:76632200-76633600	Flanking Bivalent TSS/Enh	Primary T cells effector/memory enriched fromperipheralblood	blood
33	chr15:76632200-76633600	Flanking Bivalent TSS/Enh	Primary hematopoietic stem cells G-CSF-mobilized Female	--
34	chr15:76632200-76633600	Flanking Bivalent TSS/Enh	Primary hematopoietic stem cells G-CSF-mobilized Male	--
35	chr15:76632200-76633600	Flanking Bivalent TSS/Enh	Primary mononuclear cells fromperipheralblood	Blood
36	chr15:76632200-76633600	Flanking Bivalent TSS/Enh	Brain Cingulate Gyrus	brain
37	chr15:76632200-76633600	Flanking Bivalent TSS/Enh	Brain Inferior Temporal Lobe	brain
38	chr15:76632200-76633800	Flanking Bivalent TSS/Enh	Primary T helper cells PMA-I stimulated	--
39	chr15:76632200-76634200	Flanking Bivalent TSS/Enh	Primary T helper cells fromperipheralblood	blood
40	chr15:76632200-76634200	Flanking Active TSS	Pancreas	Pancrea
41	chr15:76632200-76634400	Enhancers	Lung	lung
42	chr15:76632200-76634600	Flanking Bivalent TSS/Enh	Ganglion Eminence derived primary cultured neurospheres	brain
43	chr15:76632200-76634600	Flanking Active TSS	Right Ventricle	heart
44	chr15:76632200-76635600	Bivalent Enhancer	Fetal Brain Male	brain
45	chr15:76632400-76633600	Bivalent Enhancer	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
46	chr15:76632400-76633600	Flanking Bivalent TSS/Enh	Foreskin Keratinocyte Primary Cells skin03	Skin
47	chr15:76632400-76633600	Flanking Bivalent TSS/Enh	Brain Germinal Matrix	brain
48	chr15:76632400-76634000	Bivalent/Poised TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
49	chr15:76632400-76634200	Flanking Bivalent TSS/Enh	Cortex derived primary cultured neurospheres	brain
50	chr15:76632400-76634800	Strong transcription	HepG2	liver

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links