Variant report

Variant	rs56350179
Chromosome Location	chr12:87545676-87545677
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 190 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:181)

rs_ID	r²[population]
rs10858556	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11104222	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11104241	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11104353	0.95[EUR][1000 genomes]
rs11608450	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11608474	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11609545	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11609577	1.00[EUR][1000 genomes]
rs11609959	0.95[EUR][1000 genomes]
rs11610000	1.00[EUR][1000 genomes]
rs11610202	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11610236	0.89[EUR][1000 genomes]
rs11610240	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11610610	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11611298	1.00[EUR][1000 genomes]
rs11612996	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11613608	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11614902	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11615280	1.00[EUR][1000 genomes]
rs11615328	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11615381	1.00[EUR][1000 genomes]
rs12099694	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12099773	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12099774	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12301215	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17014343	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17014345	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17014347	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17014352	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17014355	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17014357	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17014359	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17014361	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17014363	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17014366	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17014369	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17014430	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs34212176	0.89[EUR][1000 genomes]
rs35772317	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs55675470	0.89[EUR][1000 genomes]
rs55676823	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs55742281	1.00[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs55778807	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs55844216	1.00[EUR][1000 genomes]
rs56212508	1.00[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs56337441	1.00[EUR][1000 genomes]
rs59432611	1.00[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs60530487	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60718562	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61619114	0.89[EUR][1000 genomes]
rs66473769	1.00[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs66489945	0.95[EUR][1000 genomes]
rs66507120	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs66520580	0.95[EUR][1000 genomes]
rs66543122	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs66569903	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs66574092	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs66589206	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs66606466	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs66624731	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs66629114	1.00[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs66680519	1.00[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs66721237	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs66721487	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs66739429	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs66761801	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs66796553	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs66824103	1.00[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs66881017	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs66920061	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs66935924	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs66952248	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs66983270	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs66995551	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs67126124	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs67136611	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs67152262	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs67224165	1.00[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs67261476	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs67311221	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs67347619	1.00[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs67399263	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs67407309	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs67429282	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs67448624	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs67535999	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs67562061	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs67580367	1.00[AMR][1000 genomes]
rs67639118	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs67642342	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs67651962	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs67654202	1.00[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs67687334	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs67691941	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs67735893	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs67748606	1.00[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs67751006	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs67755243	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs67768352	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs67823383	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs67825879	1.00[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs67840505	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs67964737	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs67980276	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs67982985	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs68008015	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs68009363	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs68030146	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs68133325	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs68145579	1.00[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs68166481	0.86[EUR][1000 genomes]
rs71078956	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7305593	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73175412	0.89[EUR][1000 genomes]
rs73175417	0.89[EUR][1000 genomes]
rs73175427	1.00[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs73175466	1.00[EUR][1000 genomes]
rs73175468	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73175469	1.00[EUR][1000 genomes]
rs73175473	1.00[EUR][1000 genomes]
rs73175476	1.00[EUR][1000 genomes]
rs73175480	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73175482	1.00[EUR][1000 genomes]
rs73175487	1.00[EUR][1000 genomes]
rs73175494	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73175495	1.00[EUR][1000 genomes]
rs73175498	1.00[EUR][1000 genomes]
rs73175502	1.00[EUR][1000 genomes]
rs73177627	1.00[EUR][1000 genomes]
rs73177634	1.00[EUR][1000 genomes]
rs73177637	1.00[EUR][1000 genomes]
rs73177701	1.00[EUR][1000 genomes]
rs73179835	1.00[EUR][1000 genomes]
rs73179837	1.00[EUR][1000 genomes]
rs73179847	1.00[EUR][1000 genomes]
rs73179849	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73179855	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73179857	1.00[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs73181416	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73181421	1.00[EUR][1000 genomes]
rs73181428	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73181432	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73181435	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73181437	1.00[EUR][1000 genomes]
rs73181441	1.00[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs73192720	1.00[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs73192732	1.00[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs73192735	0.89[EUR][1000 genomes]
rs73192741	0.89[EUR][1000 genomes]
rs73192749	1.00[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs73192750	0.89[EUR][1000 genomes]
rs73192753	0.89[EUR][1000 genomes]
rs73192760	1.00[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs73192766	0.89[EUR][1000 genomes]
rs73194307	0.95[EUR][1000 genomes]
rs73194312	0.95[EUR][1000 genomes]
rs73194315	0.95[EUR][1000 genomes]
rs73194345	0.95[EUR][1000 genomes]
rs73194353	0.95[EUR][1000 genomes]
rs73194356	0.95[EUR][1000 genomes]
rs73194359	0.95[EUR][1000 genomes]
rs73194369	0.95[EUR][1000 genomes]
rs73194373	0.95[EUR][1000 genomes]
rs73194374	0.95[EUR][1000 genomes]
rs73197878	1.00[EUR][1000 genomes]
rs73197888	1.00[EUR][1000 genomes]
rs73197891	1.00[EUR][1000 genomes]
rs73197895	1.00[EUR][1000 genomes]
rs73199707	0.95[EUR][1000 genomes]
rs73199710	0.95[EUR][1000 genomes]
rs73410102	1.00[AFR][1000 genomes]
rs73412012	1.00[AFR][1000 genomes]
rs73412073	1.00[AFR][1000 genomes]
rs73412087	1.00[AFR][1000 genomes]
rs73412095	1.00[AFR][1000 genomes]
rs73412099	1.00[AFR][1000 genomes]
rs73414089	1.00[AFR][1000 genomes]
rs73414095	1.00[AFR][1000 genomes]
rs73414099	1.00[AFR][1000 genomes]
rs73414185	1.00[AFR][1000 genomes]
rs73416003	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2754127	chr12:86723232-87576932	Enhancers Active TSS Flanking Active TSS Weak transcription ZNF genes & repeats Strong transcription Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv916862	chr12:86837694-87718558	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv899397	chr12:86863041-87636831	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
4	nsv868879	chr12:87207243-87578373	Weak transcription ZNF genes & repeats Enhancers Active TSS Strong transcription Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
5	nsv1052693	chr12:87219949-87573582	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Strong transcription Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
6	nsv899416	chr12:87442480-87588533	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
7	nsv899417	chr12:87475632-87588533	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
8	nsv1036043	chr12:87503257-87592799	Enhancers Active TSS Weak transcription ZNF genes & repeats Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
9	nsv1054581	chr12:87510821-87669648	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:87544600-87546400	Enhancers	HUES6 Cell Line	embryonic stem cell
2	chr12:87544800-87545800	Enhancers	Esophagus	oesophagus
3	chr12:87544800-87546000	Enhancers	Hela-S3	cervix
4	chr12:87544800-87546200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
5	chr12:87545000-87545800	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
6	chr12:87545000-87546000	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
7	chr12:87545200-87546000	Enhancers	HMEC	breast
8	chr12:87545200-87546200	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
9	chr12:87545200-87546200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
10	chr12:87545200-87546200	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
11	chr12:87545200-87546200	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
12	chr12:87545200-87546200	Enhancers	NHEK	skin
13	chr12:87545400-87546000	Enhancers	Placenta Amnion	Placenta Amnion
14	chr12:87545600-87547200	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
15	chr12:87545600-87547200	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
16	chr12:87545600-87547400	Enhancers	Fetal Brain Male	brain
17	chr12:87545600-87547800	Enhancers	Fetal Heart	heart
18	chr12:87545600-87549800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

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