Variant report
| Variant | rs56350461 |
|---|---|
| Chromosome Location | chr9:100537873-100537874 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:2)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:2 , 50 per page) page:
1
| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| ENSG00000136936 | Chromatin interaction |
rSNPs within LD-proxies of this variant (count:22)
| rs_ID | r2[population] |
|---|---|
| rs1398229 | 0.87[AFR][1000 genomes] |
| rs16924223 | 1.00[AMR][1000 genomes] |
| rs56263942 | 0.87[AFR][1000 genomes] |
| rs57456706 | 0.83[AFR][1000 genomes] |
| rs58156462 | 1.00[AMR][1000 genomes] |
| rs58359757 | 0.83[AFR][1000 genomes] |
| rs58774362 | 1.00[AMR][1000 genomes] |
| rs73655161 | 0.84[AFR][1000 genomes] |
| rs73655162 | 1.00[AFR][1000 genomes] |
| rs73655164 | 0.91[AFR][1000 genomes] |
| rs73655175 | 0.87[AFR][1000 genomes] |
| rs73655176 | 0.87[AFR][1000 genomes] |
| rs73655177 | 0.87[AFR][1000 genomes] |
| rs73655178 | 1.00[AMR][1000 genomes] |
| rs73655179 | 1.00[AMR][1000 genomes] |
| rs73655181 | 1.00[AMR][1000 genomes] |
| rs73655183 | 1.00[AMR][1000 genomes] |
| rs73656823 | 1.00[AMR][1000 genomes] |
| rs73656824 | 1.00[AMR][1000 genomes] |
| rs73656825 | 1.00[AMR][1000 genomes] |
| rs73656826 | 1.00[AMR][1000 genomes] |
| rs73656851 | 1.00[AMR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv1043753 | chr9:100458109-100599265 | Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNA | 13 gene(s) | inside rSNPs | diseases |
| 2 | nsv614934 | chr9:100482976-100550253 | Flanking Bivalent TSS/Enh Weak transcription Enhancers Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNA | 7 gene(s) | inside rSNPs | diseases |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
