The 2.0 version of rSNPBase

Variant report

Variant rs563606
Chromosome Location chr1:92558583-92558584
allele C/T
Outlinks Ensembl   UCSC
Chromatin state (count:45 , 50 per page) page: 1
No. Chromosome Location Chromatin state Cell line Tissue
1 chr1:92552000-92577400 Weak transcription Fetal Brain Male brain
2 chr1:92552200-92580400 Weak transcription Aorta Aorta
3 chr1:92552200-92583800 Weak transcription Fetal Adrenal Gland Adrenal Gland
4 chr1:92552400-92567000 Weak transcription Fetal Stomach stomach
5 chr1:92552400-92586000 Weak transcription Rectal Smooth Muscle rectum
6 chr1:92552400-92595200 Weak transcription Primary T cells fromperipheralblood blood
7 chr1:92552600-92559200 Weak transcription Brain Anterior Caudate brain
8 chr1:92552600-92566800 Weak transcription Adipose Nuclei Adipose
9 chr1:92552600-92568200 Weak transcription Primary T helper cells fromperipheralblood blood
10 chr1:92552600-92568800 Weak transcription Duodenum Smooth Muscle Duodenum
11 chr1:92552600-92568800 Weak transcription Fetal Lung lung
12 chr1:92552600-92568800 Weak transcription Placenta Placenta
13 chr1:92552600-92568800 Weak transcription Dnd41 blood
14 chr1:92552600-92579200 Weak transcription Sigmoid Colon Sigmoid Colon
15 chr1:92552600-92582400 Weak transcription Duodenum Mucosa Duodenum
16 chr1:92552600-92590000 Weak transcription Brain Angular Gyrus brain
17 chr1:92552600-92591600 Weak transcription IMR90 fetal lung fibroblasts Cell Line lung
18 chr1:92552600-92613400 Weak transcription Stomach Smooth Muscle stomach
19 chr1:92552800-92560200 Weak transcription Primary T cells from cord blood blood
20 chr1:92552800-92569800 Weak transcription Ganglion Eminence derived primary cultured neurospheres brain
21 chr1:92552800-92579000 Weak transcription Psoas Muscle Psoas
22 chr1:92552800-92613600 Weak transcription Breast Myoepithelial Primary Cells Breast
23 chr1:92553000-92561400 Weak transcription Primary hematopoietic stem cells short term culture blood
24 chr1:92553000-92570000 Weak transcription Fetal Intestine Large intestine
25 chr1:92553200-92576600 Weak transcription Fetal Muscle Leg muscle
26 chr1:92553400-92559200 Weak transcription Brain Cingulate Gyrus brain
27 chr1:92553800-92575800 Weak transcription Fetal Kidney kidney
28 chr1:92554400-92559400 Weak transcription Brain Inferior Temporal Lobe brain
29 chr1:92554400-92583200 Weak transcription Brain Dorsolateral Prefrontal Cortex brain
30 chr1:92554600-92560600 Weak transcription Brain Substantia Nigra brain
31 chr1:92555200-92580400 Weak transcription Fetal Intestine Small intestine
32 chr1:92555200-92620400 Weak transcription Rectal Mucosa Donor 31 rectum
33 chr1:92555400-92573400 Weak transcription Skeletal Muscle Female skeletal muscle
34 chr1:92555400-92580400 Weak transcription Ovary ovary
35 chr1:92555800-92568800 Weak transcription Brain Germinal Matrix brain
36 chr1:92555800-92576000 Weak transcription Primary Natural Killer cells fromperipheralblood blood
37 chr1:92556000-92560800 Weak transcription Brain Hippocampus Middle brain
38 chr1:92556000-92613600 Weak transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
39 chr1:92556400-92561600 Weak transcription Primary hematopoietic stem cells G-CSF-mobilized Male --
40 chr1:92556600-92613400 Weak transcription Fetal Brain Female brain
41 chr1:92557000-92571800 Weak transcription Primary T helper cells PMA-I stimulated --
42 chr1:92557400-92598000 Weak transcription Spleen Spleen
43 chr1:92558000-92583000 Weak transcription Primary hematopoietic stem cells blood
44 chr1:92558000-92604000 Weak transcription Left Ventricle heart
45 chr1:92558200-92561800 Weak transcription Primary hematopoietic stem cells G-CSF-mobilized Female --

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Last update: Aug 31, 2015