Variant report

Variant	rs56368804
Chromosome Location	chr1:210880413-210880414
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs12086867	1.00[AFR][1000 genomes]
rs12095079	1.00[AFR][1000 genomes]
rs12097849	1.00[AFR][1000 genomes]
rs60438341	0.96[AFR][1000 genomes]
rs74156020	0.93[AFR][1000 genomes]
rs74156029	1.00[AFR][1000 genomes]
rs74156037	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv873148	chr1:210665583-210994339	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription Genic enhancers Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases
2	nsv873150	chr1:210808270-210893233	Enhancers Weak transcription ZNF genes & repeats Strong transcription Active TSS Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer	Chromatin interactive region lncRNA miRNA target site	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:210846400-210884600	Weak transcription	Ovary	ovary
2	chr1:210857200-210882600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
3	chr1:210864400-210889800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
4	chr1:210866800-210884800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
5	chr1:210869800-210882600	Weak transcription	Brain Anterior Caudate	brain
6	chr1:210871200-210932000	Weak transcription	HSMM	muscle
7	chr1:210873800-210880600	Weak transcription	Pancreas	Pancrea
8	chr1:210874200-210887400	Weak transcription	HSMMtube	muscle
9	chr1:210876200-210881200	Weak transcription	HUES64 Cell Line	embryonic stem cell
10	chr1:210877200-210888400	Strong transcription	Breast Myoepithelial Primary Cells	Breast
11	chr1:210878600-210883600	Weak transcription	Fetal Stomach	stomach
12	chr1:210879000-210881600	Enhancers	Liver	Liver
13	chr1:210879400-210881800	Enhancers	A549	lung
14	chr1:210879400-210882200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
15	chr1:210879600-210884200	Weak transcription	Duodenum Smooth Muscle	Duodenum
16	chr1:210880000-210882200	Enhancers	Rectal Mucosa Donor 31	rectum
17	chr1:210880200-210881400	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
18	chr1:210880200-210881600	Enhancers	Sigmoid Colon	Sigmoid Colon
19	chr1:210880400-210880600	Enhancers	Colonic Mucosa	Colon
20	chr1:210880400-210881600	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
21	chr1:210880400-210881600	Enhancers	Gastric	stomach
22	chr1:210880400-210881600	Enhancers	Rectal Mucosa Donor 29	rectum

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