Variant report

Variant	rs56374433
Chromosome Location	chr14:70587125-70587126
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 79 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:78)

rs_ID	r²[population]
rs10444731	0.99[EUR][1000 genomes]
rs10444732	1.00[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10444733	1.00[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10483824	0.87[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs11158837	1.00[EUR][1000 genomes]
rs11158839	0.87[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11158840	0.87[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs1122707	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1122708	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11850592	0.99[EUR][1000 genomes]
rs12147147	1.00[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12147341	1.00[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12147621	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12147634	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17107798	1.00[EUR][1000 genomes]
rs17107893	0.99[EUR][1000 genomes]
rs17107920	0.99[EUR][1000 genomes]
rs17107925	0.98[EUR][1000 genomes]
rs17175527	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17175597	1.00[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17175695	1.00[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17175848	0.87[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17175939	0.87[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17175960	0.97[EUR][1000 genomes]
rs17765251	1.00[AFR][1000 genomes];0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17765304	1.00[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17765370	0.90[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs17765449	0.87[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17765575	0.85[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs17765586	0.87[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2605	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4902779	0.94[EUR][1000 genomes]
rs56251207	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56266899	1.00[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56935411	1.00[AFR][1000 genomes];0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60552299	0.91[EUR][1000 genomes]
rs61977430	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61977438	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61977439	0.88[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61977440	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61977443	0.98[EUR][1000 genomes]
rs61977444	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs61977445	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61977446	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61977448	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61977449	1.00[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61977450	1.00[AFR][1000 genomes];0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61977451	1.00[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61977453	0.94[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61977454	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61977455	1.00[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61977456	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61977457	1.00[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61978160	1.00[EUR][1000 genomes]
rs61978162	1.00[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61978164	1.00[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61978165	1.00[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61978175	0.87[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61978178	0.87[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61978184	0.92[EUR][1000 genomes]
rs61978185	0.92[EUR][1000 genomes]
rs61978186	0.87[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61978187	0.87[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs61978188	0.99[EUR][1000 genomes]
rs61978189	0.99[EUR][1000 genomes]
rs7140688	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7143465	0.99[EUR][1000 genomes]
rs7144377	0.87[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7148926	0.87[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs7149304	0.87[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs7158149	0.99[EUR][1000 genomes]
rs7158867	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7159555	0.85[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs8011864	1.00[EUR][1000 genomes]
rs8015011	1.00[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8015205	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8018678	1.00[EUR][1000 genomes]
rs998306	0.87[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832826	chr14:70559589-70723464	Bivalent/Poised TSS Bivalent Enhancer Enhancers Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:70579800-70599400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
2	chr14:70582200-70587200	Enhancers	Skeletal Muscle Female	skeletal muscle
3	chr14:70583400-70587200	Weak transcription	HUES48 Cell Line	embryonic stem cell
4	chr14:70583400-70587800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
5	chr14:70583400-70588600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
6	chr14:70583600-70599600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
7	chr14:70584000-70588000	Weak transcription	Fetal Brain Female	brain
8	chr14:70584000-70588200	Weak transcription	Fetal Brain Male	brain
9	chr14:70585600-70589200	Enhancers	Psoas Muscle	Psoas
10	chr14:70586600-70587200	Enhancers	Brain Inferior Temporal Lobe	brain
11	chr14:70586600-70589400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
12	chr14:70586800-70587600	Enhancers	HSMMtube	muscle
13	chr14:70586800-70588000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
14	chr14:70586800-70588000	Weak transcription	Brain Angular Gyrus	brain
15	chr14:70586800-70589000	Enhancers	HUES64 Cell Line	embryonic stem cell
16	chr14:70586800-70589200	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
17	chr14:70587000-70587600	Enhancers	Osteobl	bone

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