Variant report

Variant	rs563747671
Chromosome Location	chr5:152352514-152352515
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:2)
CpG islands
(count:61)
Chromatin interactive
region (count:0)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:2 , 50 per page) page: 1

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	GATA3	chr5:152352134-152352695	T-47D	breast:	n/a	chr5:152352535-152352545
2	GATA3	chr5:152352118-152352591	T-47D	breast:	n/a	chr5:152352535-152352545

(count:61 , 50 per page) page: 1 2

No.	Chromosome Location	Cell Line	Cell type	Cell Stage
1	chr5:152352468-152352518	HRCEpiC	kidney:	n/a
2	chr5:152352468-152352518	HMEC	breast:	n/a
3	chr5:152352468-152352518	T-47D	breast:	n/a
4	chr5:152352468-152352518	HL-60	blood:	n/a
5	chr5:152352468-152352518	ECC-1	luminal epithelium:	n/a
6	chr5:152352468-152352518	NT2-D1	testis:	n/a
7	chr5:152352468-152352518	LNCaP	prostate:	n/a
8	chr5:152352468-152352518	AG09319	gingival:	n/a
9	chr5:152352468-152352518	HRPEpiC	eye:	n/a
10	chr5:152352468-152352518	IMR90	lung:	fetal
11	chr5:152352468-152352518	PFSK-1	brain:	n/a
12	chr5:152352468-152352518	GM19239	blood:	n/a
13	chr5:152352468-152352518	GM06990	blood:	n/a
14	chr5:152352468-152352518	PrEC	prostate:	n/a
15	chr5:152352468-152352518	NHDF-neo	bronchial:	n/a
16	chr5:152352468-152352518	SK-N-SH	brain:	n/a
17	chr5:152352468-152352518	HRE	kidney:	n/a
18	chr5:152352468-152352518	MCF-7	breast:	n/a
19	chr5:152352468-152352518	GM12891	blood:	n/a
20	chr5:152352468-152352518	BJ	skin:	n/a
21	chr5:152352468-152352518	HCM	heart:	n/a
22	chr5:152352468-152352518	RPTEC	kidney:	n/a
23	chr5:152352468-152352518	GM12892	blood:	n/a
24	chr5:152352468-152352518	AG04450	lung:	fetal
25	chr5:152352468-152352518	AG04449	skin:	fetal
26	chr5:152352468-152352518	Jurkat	blood:	n/a
27	chr5:152352468-152352518	HPAEpiC	pulmonary alveolar:	n/a
28	chr5:152352468-152352518	AoSMC	blood vessel:	n/a
29	chr5:152352468-152352518	HCPEpiC	choroid plexus:	n/a
30	chr5:152352468-152352518	Hela-S3	cervix:	n/a
31	chr5:152352468-152352518	HEEpiC	esophagus:	n/a
32	chr5:152352468-152352518	A549	lung:	n/a
33	chr5:152352468-152352518	ProgFib	skin:	n/a
34	chr5:152352468-152352518	PANC-1	pancreas:	n/a
35	chr5:152352468-152352518	SAEC	small airway:	n/a
36	chr5:152352468-152352518	MCF10A-Er-Src	breast:	n/a
37	chr5:152352468-152352518	GM12878	blood:	n/a
38	chr5:152352468-152352518	AG10803	skin:	n/a
39	chr5:152352468-152352518	NB4	blood:	n/a
40	chr5:152352468-152352518	NH-A	brain:	n/a
41	chr5:152352468-152352518	HUVEC	blood vessel:	n/a
42	chr5:152352468-152352518	HAEpiC	amniotic membrane:	n/a
43	chr5:152352468-152352518	HepG2	liver:	n/a
44	chr5:152352468-152352518	HIPEpiC	eye:	n/a
45	chr5:152352468-152352518	SK-N-MC	brain:	n/a
46	chr5:152352468-152352518	H1-hESC	embryonic stem cell:	embryo
47	chr5:152352468-152352518	NHBE	bronchial:	n/a
48	chr5:152352468-152352518	Hepatocyte	liver:	n/a
49	chr5:152352468-152352518	CMK	blood:	n/a
50	chr5:152352468-152352518	HNPCEpiC	eye:	n/a

No data

Variant related genes	Relation type
ENSG00000249484	TF binding region
ENSG00000249484	CpG island

Extended variants
information (count: 11 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:11 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1023676	chr5:151979253-152925064	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
2	nsv537927	chr5:151979253-152925064	Enhancers Weak transcription Genic enhancers Active TSS Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
3	nsv883049	chr5:152159184-152399894	ZNF genes & repeats Weak transcription Enhancers Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
4	nsv600089	chr5:152200109-152488891	Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
5	nsv1017812	chr5:152220845-152467431	Enhancers ZNF genes & repeats Weak transcription Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
6	nsv537928	chr5:152220845-152467431	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
7	nsv1017488	chr5:152239716-152383640	Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
8	nsv883050	chr5:152277537-152540026	Enhancers Weak transcription Bivalent/Poised TSS ZNF genes & repeats Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
9	nsv516577	chr5:152324701-152360494	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
10	nsv883051	chr5:152327668-152409232	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
11	nsv949596	chr5:152343943-152548821	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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