Variant report

Variant	rs563756398
Chromosome Location	chr11:48003276-48003277
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:48003107..48006285-chr11:48013442..48016525,3	MCF-7	breast:
2	chr11:48002635..48003533-chr11:48130431..48131591,3	MCF-7	breast:
3	chr11:48002531..48005255-chr11:48006333..48009338,3	K562	blood:

Extended variants
information (count: 18 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:18 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1052397	chr11:47675470-48594256	Weak transcription Strong transcription Genic enhancers Enhancers Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	97 gene(s)	inside rSNPs	diseases
2	nsv530620	chr11:47765455-48664555	Weak transcription Genic enhancers Enhancers Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	93 gene(s)	inside rSNPs	diseases
3	nsv1036992	chr11:47794621-48666024	Strong transcription Flanking Active TSS Enhancers Weak transcription Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	54 gene(s)	inside rSNPs	diseases
4	nsv897326	chr11:47891334-48035474	Flanking Bivalent TSS/Enh Enhancers Weak transcription Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Active TSS Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
5	nsv1036451	chr11:47902321-48616646	Weak transcription Enhancers ZNF genes & repeats Strong transcription Genic enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	26 gene(s)	inside rSNPs	diseases
6	nsv541037	chr11:47902321-48616646	Enhancers Strong transcription Genic enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	26 gene(s)	inside rSNPs	diseases
7	nsv1047490	chr11:47916708-48388686	Enhancers Weak transcription Flanking Active TSS Strong transcription Bivalent/Poised TSS Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
8	nsv1044266	chr11:47929586-48276132	Weak transcription ZNF genes & repeats Enhancers Flanking Active TSS Strong transcription Genic enhancers Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
9	nsv541038	chr11:47929586-48276132	Weak transcription Enhancers ZNF genes & repeats Strong transcription Genic enhancers Flanking Active TSS Active TSS Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
10	nsv1053145	chr11:47967902-48086950	Enhancers Flanking Bivalent TSS/Enh Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
11	nsv870381	chr11:47989434-48142648	Enhancers Bivalent Enhancer Weak transcription Bivalent/Poised TSS Flanking Active TSS Strong transcription Genic enhancers Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	5 gene(s)	inside rSNPs	diseases
12	esv3396029	chr11:47993857-48241494	Weak transcription Strong transcription Transcr. at gene 5' and 3' Enhancers Flanking Active TSS Genic enhancers Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
13	nsv317	chr11:47995903-48007266	Bivalent/Poised TSS Enhancers Active TSS Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription Genic enhancers Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
14	esv3393084	chr11:48000076-48004474	Weak transcription Transcr. at gene 5' and 3' Active TSS Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Enhancers Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
15	esv3373486	chr11:48001001-48003549	Active TSS Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Enhancers Weak transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
16	esv3344602	chr11:48001176-48003699	Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription Active TSS Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
17	esv3346578	chr11:48001401-48004249	Enhancers Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Weak transcription Bivalent Enhancer Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
18	esv3340252	chr11:48001426-48003824	Enhancers Active TSS Transcr. at gene 5' and 3' Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Weak transcription Genic enhancers	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:126 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:48001400-48003400	Active TSS	HUES64 Cell Line	embryonic stem cell
2	chr11:48001400-48003400	Active TSS	iPS DF 6.9 Cell Line	embryonic stem cell
3	chr11:48001400-48003400	Active TSS	Brain Angular Gyrus	brain
4	chr11:48001400-48003400	Active TSS	Brain Anterior Caudate	brain
5	chr11:48001400-48003600	Active TSS	ES-WA7 Cell Line	embryonic stem cell
6	chr11:48001400-48003800	Active TSS	H9 Cell Line	embryonic stem cell
7	chr11:48001600-48003400	Active TSS	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
8	chr11:48001600-48003400	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
9	chr11:48001600-48003400	Active TSS	Small Intestine	intestine
10	chr11:48001600-48003400	Active TSS	HSMMtube	muscle
11	chr11:48001600-48003600	Active TSS	Primary T cells effector/memory enriched fromperipheralblood	blood
12	chr11:48001600-48004000	Active TSS	Pancreatic Islets	Pancreatic Islet
13	chr11:48001600-48004000	Active TSS	Gastric	stomach
14	chr11:48001800-48003400	Active TSS	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
15	chr11:48001800-48003400	Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
16	chr11:48001800-48003400	Active TSS	Primary neutrophils fromperipheralblood	blood
17	chr11:48001800-48003400	Active TSS	Esophagus	oesophagus
18	chr11:48001800-48003400	Weak transcription	Fetal Heart	heart
19	chr11:48001800-48003400	Active TSS	Lung	lung
20	chr11:48001800-48003400	Active TSS	Sigmoid Colon	Sigmoid Colon
21	chr11:48001800-48003400	Active TSS	Spleen	Spleen
22	chr11:48001800-48003400	Active TSS	GM12878-XiMat	blood
23	chr11:48001800-48003400	Active TSS	HSMM	muscle
24	chr11:48001800-48003400	Active TSS	NHDF-Ad	bronchial
25	chr11:48001800-48003400	Active TSS	NHLF	lung
26	chr11:48001800-48003600	Active TSS	A549	lung
27	chr11:48001800-48004000	Active TSS	H1 Derived Mesenchymal Stem Cells	ES cell derived
28	chr11:48001800-48004600	Active TSS	Foreskin Melanocyte Primary Cells skin01	Skin
29	chr11:48002000-48003400	Active TSS	Primary T helper memory cells from peripheral blood 1	blood
30	chr11:48002000-48003400	Active TSS	Primary T regulatory cells fromperipheralblood	blood
31	chr11:48002000-48003400	Active TSS	Right Atrium	heart
32	chr11:48002400-48003400	Active TSS	Placenta Amnion	Placenta Amnion
33	chr11:48002600-48003400	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
34	chr11:48002600-48003400	Active TSS	Primary T helper memory cells from peripheral blood 2	blood
35	chr11:48002600-48003400	Active TSS	Duodenum Smooth Muscle	Duodenum
36	chr11:48002600-48003400	Active TSS	Stomach Mucosa	stomach
37	chr11:48002600-48004000	Transcr. at gene 5' and 3'	Primary T helper 17 cells PMA-I stimulated	--
38	chr11:48002800-48003400	Bivalent/Poised TSS	ES-I3 Cell Line	embryonic stem cell
39	chr11:48002800-48003400	Flanking Active TSS	Primary hematopoietic stem cells short term culture	blood
40	chr11:48002800-48003400	Active TSS	Primary T killer memory cells from peripheral blood	blood
41	chr11:48002800-48003400	Active TSS	Foreskin Fibroblast Primary Cells skin02	Skin
42	chr11:48002800-48003600	Flanking Bivalent TSS/Enh	Dnd41	blood
43	chr11:48002800-48004000	Flanking Active TSS	Adipose Nuclei	Adipose
44	chr11:48002800-48004200	Flanking Active TSS	Primary hematopoietic stem cells	blood
45	chr11:48002800-48004200	Flanking Active TSS	Primary mononuclear cells fromperipheralblood	Blood
46	chr11:48002800-48005400	Flanking Active TSS	Primary B cells from cord blood	blood
47	chr11:48003000-48003400	Flanking Bivalent TSS/Enh	Foreskin Keratinocyte Primary Cells skin03	Skin
48	chr11:48003000-48003400	Active TSS	Foreskin Melanocyte Primary Cells skin03	Skin
49	chr11:48003000-48003400	Active TSS	Fetal Kidney	kidney
50	chr11:48003000-48003800	Flanking Bivalent TSS/Enh	Foreskin Fibroblast Primary Cells skin01	Skin

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